MidgeBase gene description page [Pn.11156]
Outline
| Gene ID | Pn.11156 |
| Type | Protein coding gene |
| Scaffold | PnScaf12855 |
| Start | 77594 |
| End | 78302 |
| Direction | - |
Sequence
Transcript: 654 (bp)
ATGTTTAATATTGTAGAATTAAGCTCTTACGTTAAGGTGCAACCGTGGGATTTTCACGGCAACTTGGCAGAGACCTGCCAACTTGATTTGAATAAGAAGTTGGCAAACAAAGTTCTTCACAATGTCGGGCTGATGCTCTTCTGCCGAGAAATAGTTTCCTTTGGCGACAGTTTTTGCGCGGTTAAAGCAAATGACGGCAGCTCCACGATTGAACTAACGTTCAGATTCGTCGCATTCCGTCCCGAAATCGGAAGCACCTTGACGGGAAGAGTGAGCAGCTGCGAGAAAGCCGGAATTCGAGTCACTCTGGGATTTTTCGATGACATATTCATTCCTGAAAGCAGACTGCAATATCCATCGCGATTCGATGAAACCGAAAATGCCTGGATTTGGGAATACGATTTGGGTAACGGCGAGACGCACGATCTCTTTATTGATGAAGGAGAAAGTGTCAAGTTCAGAGTATTCGATGAGCAATTTTTTGAACATGAGCCAAACAACCCGGTGGAGCCACCAGGGAATAAGCGAGAAACTGACCATTCGGCGCCAGTGCCGGTTGCGAAACCGAGCTACGTAATTCTCGGTTCGATGAATGAATGCGGTCTGGGCGTCGAGTCATGGTGGTCGCAAAACAATAATAATGAAGACGATAAA
Protein: 218 (aa)
MFNIVELSSYVKVQPWDFHGNLAETCQLDLNKKLANKVLHNVGLMLFCREIVSFGDSFCAVKANDGSSTIELTFRFVAFRPEIGSTLTGRVSSCEKAGIRVTLGFFDDIFIPESRLQYPSRFDETENAWIWEYDLGNGETHDLFIDEGESVKFRVFDEQFFEHEPNNPVEPPGNKRETDHSAPVPVAKPSYVILGSMNECGLGVESWWSQNNNNEDDK
| Type | Start | End | Length |
| CDS |
77597 |
78054 |
458 |
| CDS |
78107 |
78302 |
196 |
| intron |
78055 |
78106 |
52 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661998 |
DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes aegypti] gb|EAT36016.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes aegypti] |
8e-50 |
| InterPro |
IPR016027 |
Nucleic acid-binding, OB-fold-like |
|
| InterPro |
IPR005576 |
RNA polymerase Rpb7, N-terminal |
|
| InterPro |
IPR013238 |
RNA polymerase III, subunit Rpc25 |
|
| Gene Ontology(BP) |
GO:0006351 |
transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
| Pfam |
PF08292.7 |
RNA polymerase III subunit Rpc25 |
3.1e-36 |
| Pfam |
PF03876.12 |
SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 |
5.6e-06 |
| Pfam |
PF00575.18 |
S1 RNA binding domain |
0.0013 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06421 |