MidgeBase gene description page [Pn.11142]
Outline
| Gene ID | Pn.11142 |
| Type | Protein coding gene |
| Scaffold | PnScaf12855 |
| Start | 22334 |
| End | 24261 |
| Direction | - |
Sequence
Transcript: 774 (bp)
ATGTACAAGTGGAATGGACGCGTGGCCATTGTTACGGGTGCGTCGACAGCCATCGGAATGTCCATCTGCAAATCGCTGGTGACACACGGCTTGACAGTGTGCGCCGTGGCGAAGAAGTCGGGCATAGCGAAATTGGACCTCTTCAACAAGACACTGTTCGATGTCAAGGGAAAGATGTTAACATTCGAGTGCGACATCACGGACGAGGAGCAGCTCAAAGCCGTTTTTCGGCACATAGGCGACAAATACGACGGCGTCGACTTGCTCGTCAACAACGCCAATGTGATGCTCAAGGGTCTGCTGCTGGACACCAACAACACGGCCGACATGTACCACATCATGAACACAAACATCCTCGCGCTGTGCGTCGTTACGCGAGAAGCTGTCAAGCTGATGCGGATGCGCACGATGGAGAGGAAAGATGTGGGGCACATCGTAAATATCAATTCAATTTTCGGACACAAGATTATGGCCGTCGTGCCTGGAACTAAACCGATGAATTCACTCTACCCCGCGTCAAAATATGCATCAACCGCCATCACAGAGTGTGTTCGACAAGAATTGCTATTTTTGGATGAAACTGTAAAAGTCACGAGCATCTCACCCGGATTAGTCGAGTCGGACGTGATTCAAGAGAATGCAAACGATGAAGTCTTGAAACTGATGCCTTCAATAAAAGCTGACGATGTTGCGGCAGCTGTAATTTTTGCGCTGGGTGTAAAGGAAGGTGTTGAGGTTCATGAGATCGTAATTAAACCAGTTGGTGAGTATCTG
Protein: 258 (aa)
MYKWNGRVAIVTGASTAIGMSICKSLVTHGLTVCAVAKKSGIAKLDLFNKTLFDVKGKMLTFECDITDEEQLKAVFRHIGDKYDGVDLLVNNANVMLKGLLLDTNNTADMYHIMNTNILALCVVTREAVKLMRMRTMERKDVGHIVNINSIFGHKIMAVVPGTKPMNSLYPASKYASTAITECVRQELLFLDETVKVTSISPGLVESDVIQENANDEVLKLMPSIKADDVAAAVIFALGVKEGVEVHEIVIKPVGEYL
| Type | Start | End | Length |
| CDS |
22337 |
22375 |
39 |
| CDS |
22460 |
22561 |
102 |
| CDS |
23154 |
23265 |
112 |
| CDS |
23398 |
23405 |
8 |
| CDS |
23581 |
23613 |
33 |
| CDS |
23707 |
24048 |
342 |
| CDS |
24124 |
24261 |
138 |
| intron |
22376 |
22459 |
84 |
| intron |
22562 |
23153 |
592 |
| intron |
23266 |
23397 |
132 |
| intron |
23406 |
23580 |
175 |
| intron |
23614 |
23706 |
93 |
| intron |
24049 |
24123 |
75 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001844186 |
oxidoreductase [Culex quinquefasciatus] gb|EDS36399.1| oxidoreductase [Culex quinquefasciatus] |
5e-75 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
0.0071 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
5.9e-06 |
| Pfam |
PF04321.12 |
RmlD substrate binding domain |
0.06 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
2.6e-06 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
5.5e-18 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
0.00031 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.0073 |
| Pfam |
PF08659.5 |
KR domain |
2.9e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.09452 |