MidgeBase gene description page [Pn.11091]
Outline
| Gene ID | Pn.11091 |
| Type | Protein coding gene |
| Scaffold | PnScaf12768 |
| Start | 28770 |
| End | 30446 |
| Direction | - |
Sequence
Transcript: 1359 (bp)
ATGTTTAACAAAAGCGAAAATCAGAAGCAGGAGAAGCATTCGGAGCCCAGCAAGCACCTCACCCACGAGGAGAACACATTAGTGCTGCACCTTGTCGGCAAGCGATGCCAAAGCCAGTGCACGACGATCGCCCAGCTTTTCATCACCGAACCGTCTCGCCACCAGCGATGGGTGAAGAAATACACGGGCGTTCTGTGCTTCGTCAAGGACAACCAGAAAAAGTCCTACTTCATGCGGATGTTCTGCCTCATGAGCACCAAATTGGTCTGGGAGCAGGAAGTGTACGACGAGCTCGAAATAAGTCGCGTCAAGCCGTTCTTACTCACATTGGAGGGAGACGATCGAATGGTGGCCTTGAATTTCGCTTTTAATGATGAAATCGAACTCTTCCTCTTCATCTCTACGTCGACCATCCAGCGGAGGAGGAAGCGACGCGAAGAGCGAAAGGCGACGATTGCCGCTACCAACGCACATCAAGTGTTGCAAAAGGATGCCGACAAGAAGAAGGGCAAAAATAAGAAGAAGAAAACGTTAACGAAGGCCGACATTGGCACTCCGAAGAATTTTATTCACGTCAATCATGCGGGAATGGAGATGATCATCAAGCACGCCGGAATAACTTTGACGGAGTTAAACGATCCGAAAACCAGGGAATTTATCTACGATTTCTTGAAGAAAAACAAATGCCAGAGTGGACCAGCCCTTAAGACAGAGCCTCTGCCCGCGACGCCACCTTCGCTGCCGCCAAGGAACAAAGGAGACTCCAGACCGATGTCTTCGGCTGTCGCTGCACCAAAACCACCGAATGCTGCCAATAATTTCGGAACATCGCCATCGGCGAGAAAGCCACCGCCCGACTTCCCCGCTCCTCCTGTACCTTCGAGCAGTCCTCTTCCACCGCCACCAACAGCCGCTCCTCCCTCGCGCCATCAAATGAAACAAAGACCTTTACCGCCGCCGCCTATTCAAAATGCACGATCTGATACATTCAACTCGCCACCGCCTGCACCGCCACCGTTCACTGGACCAGTGTTGGGTGCACCAATGCCACCACCACCGCCGCCTGCACCGCTTTTCGAATCTGAAGAAGAAGTTTCGCAACCGATCGTTAAAAGCGATCGTCCGAAGCCAGCGCCAGGAAACGCTTTCAATGATCTGATGAACAGCATTAAAAGTGGCAAGGCGTTGAAGCCTGTCGAGAGCAGACAAGTAAATGAGTCTCCGAGGGTTGCCGCAGCCGGAGCAGACACGATTGCTGAGGCGCTGAAGAGAGCGATGGAGATTCGCAGAGGCACCGTTGCAGACTCCGAATCGGATGGCGATGGCCTCGACGATGACGATGAAGACGAAGATTGGGAC
Protein: 453 (aa)
MFNKSENQKQEKHSEPSKHLTHEENTLVLHLVGKRCQSQCTTIAQLFITEPSRHQRWVKKYTGVLCFVKDNQKKSYFMRMFCLMSTKLVWEQEVYDELEISRVKPFLLTLEGDDRMVALNFAFNDEIELFLFISTSTIQRRRKRREERKATIAATNAHQVLQKDADKKKGKNKKKKTLTKADIGTPKNFIHVNHAGMEMIIKHAGITLTELNDPKTREFIYDFLKKNKCQSGPALKTEPLPATPPSLPPRNKGDSRPMSSAVAAPKPPNAANNFGTSPSARKPPPDFPAPPVPSSSPLPPPPTAAPPSRHQMKQRPLPPPPIQNARSDTFNSPPPAPPPFTGPVLGAPMPPPPPPAPLFESEEEVSQPIVKSDRPKPAPGNAFNDLMNSIKSGKALKPVESRQVNESPRVAAAGADTIAEALKRAMEIRRGTVADSESDGDGLDDDDEDEDWD
| Type | Start | End | Length |
| CDS |
28773 |
29285 |
513 |
| CDS |
29369 |
29458 |
90 |
| CDS |
29519 |
29808 |
290 |
| CDS |
29860 |
29886 |
27 |
| CDS |
29952 |
30051 |
100 |
| CDS |
30108 |
30446 |
339 |
| intron |
29286 |
29368 |
83 |
| intron |
29459 |
29518 |
60 |
| intron |
29809 |
29859 |
51 |
| intron |
29887 |
29951 |
65 |
| intron |
30052 |
30107 |
56 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002070527 |
GK10982 [Drosophila willistoni] gb|EDW81513.1| GK10982 [Drosophila willistoni] |
7e-45 |
| InterPro |
IPR003124 |
WH2 domain |
|
| InterPro |
IPR000095 |
PAK-box/P21-Rho-binding |
|
| InterPro |
IPR011993 |
Pleckstrin homology-like domain |
|
| InterPro |
IPR011026 |
Wiscott-Aldrich syndrome, C-terminal |
|
| InterPro |
IPR000697 |
EVH1 |
|
| Gene Ontology(BP) |
GO:0008154 |
actin polymerization or depolymerization |
|
| Gene Ontology(BP) |
GO:0006461 |
protein complex assembly |
|
| Gene Ontology(CC) |
GO:0015629 |
actin cytoskeleton |
|
| Gene Ontology(MF) |
GO:0003779 |
actin binding |
|
| Gene Ontology(MF) |
GO:0005083 |
small GTPase regulator activity |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00568.18 |
WH1 domain |
1.6e-26 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes