MidgeBase gene description page [Pn.11060]
Outline
| Gene ID | Pn.11060 |
| Type | Protein coding gene |
| Scaffold | PnScaf12705 |
| Start | 4738 |
| End | 11703 |
| Direction | - |
Sequence
Transcript: 1101 (bp)
ATGCACATTCTAAATCTCGGAATGTCATCGAATCAAGCTATTACCGTGAGCCTTGGCGGAAAGTCTCAAGAAATCGATGCTTTTTGGCTGAGAGATCACTGCCGGTGCGAGCTGTGCTACAATTTCACGACCTTTCAGAGAAAGACGAGCATTTTGGACATCACCGATGACATAAACGCCGACGACTTTCGAGTCGAAGGAGGCCGGCTTCAGGTTACCTGGAAGGACGGCCATAAATCATCCTACGACACTGAATTTTTGCTGAAAAATCTCAGCCCACCGGTTGAGCCGCTAGAGCGAATTTTGTGGACCAAAGCAAGCTTCAAGATGGACGAAAAAATAACGATGAGCGATTTTCTGTGCAGTTCCCAAGCGCAGAGGGCTCTTCTGAGAAATCTCTATGTCTACGGCTGTGCCTTCGTCGACGACGTCGAACCGACTGAAAAAGGCACTGAGCTCTGCATCAGAACCCTCTTCGAGATCCAGAAGACCTTCTTCGGCGAAATGTGGACGTTCTCGGATGCAAACCTCGATCACTCCGACACCGCCTACACCAACTACTTCCTGCCGGGACACAACGACAACACCTACTTCAACGATCCGGCTGGTCTGCAGATTTTGCACTGTATTTTGGACGAGTGCACGGGCGGCGAGAACTTCCTCATCGATGGCTTCCAGGTGGTGGCGAGTCTAGAGAAAAATCACCCGGAAGTTTATGAGAGGCTCACGAAAACCGCGGTGCCTGCGGAGTTTATCGAGAACGGCCGCCACCACAAGCACTGCGCTCCGATCATCCAGCTCGATCCGACGACTGGCGACGTCCTTCAGATCCGCTACAACGACGCCGACCGAGCTCCGTTCAACACTGTTAAGCCGACGGAAATTCGGCAGTTTTACAAGGACCTGAAGCTCCTGGCCGCAGAGTTTGCGCGCGACGAAAACCAAATTGTGTTCAAGCTCAGACCGGGTCGGGTGATGTTCTTCGACAACTGGCGCGTTCTGCACGGTCGCCTCGCCTACACCGGCCGACGAACGATGAGCGGCAGCTATGTTTCGCGCACGGAATTCCAGTCGGTGCTGCGCGTCAACGGCTTCATTCGT
Protein: 367 (aa)
MHILNLGMSSNQAITVSLGGKSQEIDAFWLRDHCRCELCYNFTTFQRKTSILDITDDINADDFRVEGGRLQVTWKDGHKSSYDTEFLLKNLSPPVEPLERILWTKASFKMDEKITMSDFLCSSQAQRALLRNLYVYGCAFVDDVEPTEKGTELCIRTLFEIQKTFFGEMWTFSDANLDHSDTAYTNYFLPGHNDNTYFNDPAGLQILHCILDECTGGENFLIDGFQVVASLEKNHPEVYERLTKTAVPAEFIENGRHHKHCAPIIQLDPTTGDVLQIRYNDADRAPFNTVKPTEIRQFYKDLKLLAAEFARDENQIVFKLRPGRVMFFDNWRVLHGRLAYTGRRTMSGSYVSRTEFQSVLRVNGFIR
| Type | Start | End | Length |
| CDS |
4741 |
5282 |
542 |
| CDS |
5350 |
5897 |
548 |
| CDS |
11693 |
11703 |
11 |
| intron |
5283 |
5349 |
67 |
| intron |
5898 |
11692 |
5795 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001660308 |
epsilon-trimethyllysine 2-oxoglutarate dioxygenase [Aedes aegypti] gb|EAT38365.1| epsilon-trimethyllysine 2-oxoglutarate dioxygenase [Aedes aegypti] |
3e-91 |
| InterPro |
IPR012776 |
Trimethyllysine dioxygenase |
|
| InterPro |
IPR003819 |
Taurine catabolism dioxygenase TauD/TfdA |
|
| Gene Ontology(BP) |
GO:0045329 |
carnitine biosynthetic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0050353 |
trimethyllysine dioxygenase activity |
|
| Gene Ontology(MF) |
GO:0005506 |
iron ion binding |
|
| Gene Ontology(MF) |
GO:0031418 |
L-ascorbic acid binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF02668.11 |
Taurine catabolism dioxygenase TauD, TfdA family |
8.6e-39 |
| Pfam |
PF06155.7 |
Protein of unknown function (DUF971) |
0.0002 |
| Pfam |
PF13640.1 |
2OG-Fe(II) oxygenase superfamily |
0.11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000358447 |
| C. quinquefasciatus |
CPIJ012189 |
| A. gambiae |
AGAP005447 |
| B. mori |
BGIBMGA001273-TA |
| M. musculus |
ENSMUSG00000079834 |
| P. humanus |
PHUM613090-PA |
| P. vanderplanki |
Pv.10651 |
| A. aegypti |
AAEL009731 |
| D. melanogaster |
FBgn0038795 |
| D. plexippus |
DPOGS205173PA |
| H. sapiens |
ENSP00000335261 |