MidgeBase gene description page [Pn.11051]
Outline
| Gene ID | Pn.11051 |
| Type | Protein coding gene |
| Scaffold | PnScaf12684 |
| Start | 6744 |
| End | 8813 |
| Direction | + |
Sequence
Transcript: 1845 (bp)
ATGAAGCACATAAGCTTCTTTATTTTCTCGCTCTTGACCGACTGTTCAGCTCTCAGTCCCGAGAAATTCGACAGAGATCACACGCGACCAGTCAACCCCGACCTCATCGACGCCGTCAACTTTGTCTTCTTCGGTGCTCACTACTACCAAGACTTCCGCACCGTGACCATCACCGAGAGTGTCGCGAAGCGCCGTGACAGCTTCCTCCACGACCTCAAGAGCAAAATCATAAACAACGAAAACAGCGAGCTTTTTCTCCTCGAACTCTGCGACCCGAACCTCGACAACTCGCCCAAGTTCCGAATGAAGGCGAAAAATCTCATTCTGATCGACTCGCTCGACTCTTTCAGAGCCTTCGACGCGACTTTCACGCGAAATCGCTTCAGTTTTCGCGGGCAATTTATTTTCGTGCTTACGAGCGGCTACATCGGAGAGAACGCGACGCGTGAAATTTACAGCACGATGAGGCGTCGCTCGATTTACACGATTCACCTCATTTTCGAGGCGCCCGGTGGCGTGACCAACATGACGGTCTTTCATCCCATCGGGCATGGCGCTTGCGACAATGTACGCGAAATTTTGATAAATTCAGTCAAAAACGGCAAATTTTTGCATGGAAGTTCGTACACATTTATTAACGGCCGCATTCGCGACTATCATCAGTGTCCGGTTCGCGTCGTCACTTTCGAGCGGTGTCCAGCGATGTGCGGCGGAAAAGAGTTGCGGGGCTTCGACTGGGAAATTCTTCAGGAGCTGGCGCATCGACTCGACTTCAGTTTGAACGTGAAATTCCTCGAGGGCGAACAGCAATGGGGCGTAATTTATGAGAACGCTACCGTCACCGGTGGGCTTCGAAGAGTCGAGAAAAAGGAGGCTGATATGGCCATCGGAGGGTATTTTCTGACAACCCGTCTGATGTCGCGATTTGGAGCCAGCTTTGCCTACTACAGCATTCCAATTGTCGTCGTCGTTCCACCCCCTCCAAAATTCACGCCATTTGAGAAGCTTCTGCTGCCTTTCGACGGGTTCACCTGGTTCCTCCTGCTCGCCGTCTTTCTTGTCGGATTTATTACAATTTTCATTATCAGCAAGCAGTTTCAGCAGCTTAGAAGTGCCGTTTATGGCCAAGGTGTCCAAACGCCTGGCATGAACATGGTGGCCGCCATTCTGGGCTTGCAGCAGTCAAAACTCCCAAGGAAGACCTTCCCGCGCTTGATTCTCATGAATTTCTTAATTTTTTGCCTAATCATCCGCAATTGCTACCAGGGGGCGCTCTACCACTTCCTCCAGTCGGATGGCCGGCACAGGGACATGCAGACGGTCGAGGATCTGGTGGCCAAGAATTTTCGCTTCTTCATTCACGCGACCAATATCGACCTCATCGATGAAGCGTCTGAGCTTTTCAGGCGAAAGATTCTTGTGCGAAGCGAGTCCGAGTTGCCCTTCAATGCACCTGTCGACGAGACTCTCAAGGCCGGCTTCATTACGCCACTCACCGACGTCATCCATCGAAATCAAGCGAACCAAGGTCGGCTTTCACTCCGCTTCTGTCCCGAAAAAGTCTCGGAGAATCGAGTGGCAATCATCTATGGCAAGAACTTCTACCTGAAGGCTGCCATCAATGACCACCTCGGCGTGTTTGAGTCGTCTGGACTGCTCAAGCACTGGATGAACCGGCATGTCGACGAGAGGTTCCAAAAGCGCACCACTGACAGCAGTCAACCGGCTAAAATGAATCTTGAACATCTTTCCGGAATTTTTCGGCTGATGGTCTTCGGAAACTGTGTGGCAGTTGCCACATTTGTCGCTGAAATTTCAATCGGTCGCGTGAAAAATTTTAGAAAA
Protein: 615 (aa)
MKHISFFIFSLLTDCSALSPEKFDRDHTRPVNPDLIDAVNFVFFGAHYYQDFRTVTITESVAKRRDSFLHDLKSKIINNENSELFLLELCDPNLDNSPKFRMKAKNLILIDSLDSFRAFDATFTRNRFSFRGQFIFVLTSGYIGENATREIYSTMRRRSIYTIHLIFEAPGGVTNMTVFHPIGHGACDNVREILINSVKNGKFLHGSSYTFINGRIRDYHQCPVRVVTFERCPAMCGGKELRGFDWEILQELAHRLDFSLNVKFLEGEQQWGVIYENATVTGGLRRVEKKEADMAIGGYFLTTRLMSRFGASFAYYSIPIVVVVPPPPKFTPFEKLLLPFDGFTWFLLLAVFLVGFITIFIISKQFQQLRSAVYGQGVQTPGMNMVAAILGLQQSKLPRKTFPRLILMNFLIFCLIIRNCYQGALYHFLQSDGRHRDMQTVEDLVAKNFRFFIHATNIDLIDEASELFRRKILVRSESELPFNAPVDETLKAGFITPLTDVIHRNQANQGRLSLRFCPEKVSENRVAIIYGKNFYLKAAINDHLGVFESSGLLKHWMNRHVDERFQKRTTDSSQPAKMNLEHLSGIFRLMVFGNCVAVATFVAEISIGRVKNFRK
| Type | Start | End | Length |
| CDS |
6744 |
7722 |
979 |
| CDS |
7945 |
8810 |
866 |
| intron |
7723 |
7944 |
222 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865804 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS42301.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-45 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
2.8e-10 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
3.7e-05 |
| Pfam |
PF09116.5 |
gp45 sliding clamp, C terminal |
0.016 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes