MidgeBase gene description page [Pn.11001]
Outline
| Gene ID | Pn.11001 |
| Type | Protein coding gene |
| Scaffold | PnScaf12563 |
| Start | 286 |
| End | 1758 |
| Direction | - |
Sequence
Transcript: 1338 (bp)
ATGGCGGCTAAGCGATTACTTCAGAAATGTGTCGACAGAATTGCTGAGAAGGAGGAAAAACTGATGTATTTAGAGAAGGCGATTAACCCGCTACTCGGCGACGACGATCAAGCATCGCTTTCGTTCATTTTCGAAAAGTTCTTGAACAACAAGTTGAAGGTTCGACAGGAGAGCTGGCCATTCATCAAGCCTGTCAATAAAAAGCTGGTGAAAGGATATTACGACATCATCAAGCACCCAATGGACTTGGAGACAATGACAAAGAAAGTCTCAGCGCATCGCTACCATTCGCGAACCGATTTTCTCGCCGATCTTCAGCTGATTGCCAGCAATAGTGAAAAATTCAACGGCGAAGACTCAAAGCTCACCAAAGAAGCAAAGCTGTTGATCGATTTCGCGCGAGAATCGTTGGAGGGATTGGATATTTCTCACTTGGAGGAAAACATCGCAAAAGTTCAAGAGCGTGCGAAGCAGTTGGAGTTCAATTGGGGCGACGATGAGTCGTTTGCCGACTTTCCGTCGAGAAGACCCTCGAGAGATGGTGATGACGCGGAAGACCGTCCCGGACCATCGGTTATTCCTCCGCAGCCGGAGGTCAAACGATCCAGAGGACGTCCTCGTAAAAATCCTGGTGCAGCAACAAGCAAGTATGTCAAGAAGGCAGACAAAGTTAAACCGGTGGAGGAAGTTATTGACGTTGTCGGAGACTTCGGCCCGGGACCATCGAAACAAGAAGAGCAGAGATTCGCGCCTGAAAACGAAAGTTTCGGCTTTGATGTTACGAGCTTACAAGGCGCTGCCGAATTGCAAAGTTCGCAAATTATGATGCCACAGCAAATGGGTCAAGACGATAACGACAGCCAGCAAGCGGCTGAAGCGATGATTCAATTGGGTTACTATCCTACACAGCAGCAGCAAGATGAATCGCTTGACTTTGATCCGAACTACGACCCATCAGACTTCCTCATGAAAAAGGACTCGGGAAGTGGATCGCAAGAACAGCTGCCAGTTCAGCAGACTCAACAGCCCTATCAAGAGAACTTTGATTTCACGGGCGGCATTCAAGAAGGTGCAGGCGGGGATGAGCTGTCTATGCAGCAGCAGAGCTATTATGGCAATTACCAGCAACAATCGTTCAACGTTGGCGACTACTCGTTCCAAGCCCAACAGTCGATGATGCAGGAAGACTATTCGCAATCGCAGACTCAGCCGATTGTGACAGATGGCGGTGTTCTGGCGGATCTCGACATTTCAGATTCCGACGATGAAAACGATGAGCACAATTCTTCAGAGAATAAAGCCAGCACCAGCAAGGAGGATGATGAAGGCCTTTGGTTC
Protein: 446 (aa)
MAAKRLLQKCVDRIAEKEEKLMYLEKAINPLLGDDDQASLSFIFEKFLNNKLKVRQESWPFIKPVNKKLVKGYYDIIKHPMDLETMTKKVSAHRYHSRTDFLADLQLIASNSEKFNGEDSKLTKEAKLLIDFARESLEGLDISHLEENIAKVQERAKQLEFNWGDDESFADFPSRRPSRDGDDAEDRPGPSVIPPQPEVKRSRGRPRKNPGAATSKYVKKADKVKPVEEVIDVVGDFGPGPSKQEEQRFAPENESFGFDVTSLQGAAELQSSQIMMPQQMGQDDNDSQQAAEAMIQLGYYPTQQQQDESLDFDPNYDPSDFLMKKDSGSGSQEQLPVQQTQQPYQENFDFTGGIQEGAGGDELSMQQQSYYGNYQQQSFNVGDYSFQAQQSMMQEDYSQSQTQPIVTDGGVLADLDISDSDDENDEHNSSENKASTSKEDDEGLWF
| Type | Start | End | Length |
| CDS |
289 |
785 |
497 |
| CDS |
849 |
1052 |
204 |
| CDS |
1122 |
1758 |
637 |
| intron |
786 |
848 |
63 |
| intron |
1053 |
1121 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657406 |
transcription initiation factor TFIID subunit 1 [Aedes aegypti] gb|EAT42378.1| transcription initiation factor TFIID subunit 1 [Aedes aegypti] |
8e-65 |
| InterPro |
IPR018359 |
Bromodomain, conserved site |
|
| InterPro |
IPR001487 |
Bromodomain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00439.20 |
Bromodomain |
2.3e-21 |
| Pfam |
PF13789.1 |
Domain of unknown function (DUF4181) |
0.063 |
| Pfam |
PF02178.14 |
AT hook motif |
0.21 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL009373-PA |
| P. vanderplanki |
Pv.04228 |
| H. sapiens |
ENSP00000362880 |
| D. melanogaster |
FBgn0010355 |
| H. sapiens |
ENSP00000406517 |
| A. gambiae |
AGAP003882 |
| M. musculus |
ENSMUSG00000031314 |
| T. castaneum |
TC002507 |
| D. plexippus |
DPOGS200534PA |
| P. humanus |
PHUM537430-PA |
| N. vitripennis |
NV50300-PA |
| A. aegypti |
AAEL006082 |
| H. sapiens |
ENSP00000406549 |
| S. invicta |
SI2.2.0_09804 |
| C. quinquefasciatus |
CPIJ003658 |
| H. sapiens |
ENSP00000389000 |
| H. sapiens |
ENSP00000276072 |
| H. sapiens |
ENSP00000418379 |
| B. mori |
BGIBMGA007052-TA |
| H. sapiens |
ENSP00000362895 |
| A. mellifera |
GB11337-PA |