MidgeBase gene description page [Pn.10964]
Outline
| Gene ID | Pn.10964 |
| Type | Protein coding gene |
| Scaffold | PnScaf12489 |
| Start | 2365 |
| End | 7858 |
| Direction | - |
Sequence
Transcript: 2385 (bp)
ATGATCAAAATAGTATTAATTAGTGGAAATAGTCGATTTTGCGTGAGTCAAGACTCGTGTGATAAGTGCCTGAATCAGCACATAACGTGCGCCTGGTGCTCTGATCGCCAATATAATATGCTTGGAGCGCGTTGCATGACAGAGAGCGACTTGTTAAAGGCAAATTGCCGACGAGAGTTCATTCAAGTCAACAAACCGGTGCCGATGCGGAAGACAAAGGACGATGACTTGCGCGATTTCAGCCGCGACTATGATCCGGTGCAGATTCGTCCACAAAACGTTCGCATGAAGCTGCAGAAAAACCGCCCGCAAACCGTCCAATTGAAATATAAGCCGGCCAAGAACTATCCGCTCGATCTCTACGTGCTCATGGACCTCACGTGGTCGATGCGCGACGACAAGGAGACGCTCGTAAACATGGGCGACAGCCTCTCGAAATCCCTCAGCAATCTGACCGAGAACTTTCGACTCGGCTTCGGCTCGTTCGCCGACAAGCCGATAATGCCGTTCGTCGATCCGGGCAGCGCCGATAATCCCTGCAAGCTCGTGCACGAAACTTGTTTGCCGGCGTACGGCTTCAAGCATAAGCTCCGCATGACCGACGACATTCAGCAGTTCATCAGCAAGGTGAACGAGAGCGATGTCACCGGCAACTTGGACAACCTCGAGGGTGGCCTCGACGCCCTCATGCAGGTGCTCGTGTGCAACGAGGAGATCGGCTGGAAAAACCGGACGCGCAAGATTGTCGTGTTCGCGTCGGACGGGCCGATGCATTTTGCGGGCGACGGCCTTCTCGCCGGCTTGGTGGCGAAGAACGACAAGCGCTGCCACCTGGACGCCGAAGGCGACTACCTCGCGTCGCTTCAGTTCGACTATCCCTCGCTTGAGGAGATTTATCGCGAGCTGCTGCGCACGAAAGTGAGCGTGGTGTTCGCGGTGACGTCCGAGGTCATCTACCACTACGACCGCATCCACGAGCTGATGGAGGAGATCACGAGCGTGGGTCAGCTGGCGGGCGACTCGTCCAACATCCTGCAGCTCCTCGAAAACGGCTTTAAGCGGGCGGTCAAGCGCGCACAGTTCCAGGATGACGCGCCCGACTTCATCCGCGTTGACTACAAGACGCGTTGCGGCGGAAAATACGAGACTGCGGTGGATACGAACAAGTGCGACAACATCGAGATCGGACGCGAGTACGAGTTCGATTTGAGTCTCACGCTGCTGCGCTATCCCGAGGACGGCGCAAAGAGCGTCAAGATTCGGATTGAGGAGGCAAACATCGATACGGAGGCGACCGAAATTGAGGTCGAGATTGACTATCCGTGCACGGAGTGTCTCCAGCTACGCGTCGAACAGGCATCTGCTTTGTGCTCGCGCAAAGGCGTGTACACGTGCGGCGCGTGCGAATGCAACAGCGGATACGTCGGGCGACAGTGCGAGTGCAATCTCCAGGAGTATTCGAGCAACAAGGAGTTGGACACGCAATGCCGGCCGCCGCTCACTGTCAACAACGAGACTGTTCTCGGAGCGCCGTGCTCTGCTCGGGGCGAATGCCTCTGCGGCCAGTGTCTGTGCAACGTGGATTACGCCGGAAAATATTGTGAATGCAAAACGTGCCCGATCTCGCAGCTCAACGGCGAGGAATGCAGTGGTCAAGCGCTGTATTGTGATTGCGGTACTTGTCACTGCAAGCCGGAATTTTCTGGAACAACCTGTGAGTGCTCGACACTCCAAACCAATTGCATTCGTCCCGACAGCGAAGACGCCGAGAAGAAGATCTGCTCGGGTCGCGGAACGTGCGAGTGCAATCAGTGCGAGTGCGAGAAAACGCATTTCGGAAAATTCTGCGAAAGTTCGCGGGAAAACAAGACGGCAAACTCGCTGTGTCTTCACTACGAGACGTGCGTACAATGCGTCATAAATCGTAAACTACAGCAGGAGTGCTCGGATTACGAGGAGAGGTGCTCGGAAAATGGAGTGCTCTATAAATCAGACTTTTATGACGATATCTCAGATGCCGATATTTTATGCATAGCGCGTGTGAGATACGACAATGACACCGTTTGTGAGTACAGATTTACGTATGAGCGCGATGAGAATTCAGAGACAAGCCTTCGAATCGAGGACGTGCGATGTCCGCCAATAAACGTGGCAGCCTATTCAGCACTTGGCGTCGTACTTGCAACGGTACTGATTGGACTTTTAATCATTATGATTGTGAAGTGCAACATTTACCTTGCTGACAAGCGAGAGTTCGCGAAATTCGAGGAGGAGCGTCAAAAGTTCACCGAATACAAGTTTGAAAGTCCACTCTACAAGTCACCGGTGACGACATTCAGAAATCCCCAAAATACTAGTGAATCATCCAATGCCTTTGAAATGAAT
Protein: 795 (aa)
MIKIVLISGNSRFCVSQDSCDKCLNQHITCAWCSDRQYNMLGARCMTESDLLKANCRREFIQVNKPVPMRKTKDDDLRDFSRDYDPVQIRPQNVRMKLQKNRPQTVQLKYKPAKNYPLDLYVLMDLTWSMRDDKETLVNMGDSLSKSLSNLTENFRLGFGSFADKPIMPFVDPGSADNPCKLVHETCLPAYGFKHKLRMTDDIQQFISKVNESDVTGNLDNLEGGLDALMQVLVCNEEIGWKNRTRKIVVFASDGPMHFAGDGLLAGLVAKNDKRCHLDAEGDYLASLQFDYPSLEEIYRELLRTKVSVVFAVTSEVIYHYDRIHELMEEITSVGQLAGDSSNILQLLENGFKRAVKRAQFQDDAPDFIRVDYKTRCGGKYETAVDTNKCDNIEIGREYEFDLSLTLLRYPEDGAKSVKIRIEEANIDTEATEIEVEIDYPCTECLQLRVEQASALCSRKGVYTCGACECNSGYVGRQCECNLQEYSSNKELDTQCRPPLTVNNETVLGAPCSARGECLCGQCLCNVDYAGKYCECKTCPISQLNGEECSGQALYCDCGTCHCKPEFSGTTCECSTLQTNCIRPDSEDAEKKICSGRGTCECNQCECEKTHFGKFCESSRENKTANSLCLHYETCVQCVINRKLQQECSDYEERCSENGVLYKSDFYDDISDADILCIARVRYDNDTVCEYRFTYERDENSETSLRIEDVRCPPINVAAYSALGVVLATVLIGLLIIMIVKCNIYLADKREFAKFEEERQKFTEYKFESPLYKSPVTTFRNPQNTSESSNAFEMN
| Type | Start | End | Length |
| CDS |
2368 |
2738 |
371 |
| CDS |
3607 |
3998 |
392 |
| CDS |
4349 |
4537 |
189 |
| CDS |
4809 |
5571 |
763 |
| CDS |
5764 |
6325 |
562 |
| CDS |
7582 |
7652 |
71 |
| CDS |
7822 |
7858 |
37 |
| intron |
2739 |
3606 |
868 |
| intron |
3999 |
4348 |
350 |
| intron |
4538 |
4808 |
271 |
| intron |
5572 |
5763 |
192 |
| intron |
6326 |
7581 |
1256 |
| intron |
7653 |
7821 |
169 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001845473 |
integrin beta-nu [Culex quinquefasciatus] gb|EDS40506.1| integrin beta-nu [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR013111 |
EGF, extracellular |
|
| InterPro |
IPR002369 |
Integrin beta subunit, N-terminal |
|
| InterPro |
IPR016201 |
Plexin-like fold |
|
| InterPro |
IPR015812 |
Integrin beta subunit |
|
| InterPro |
IPR002035 |
von Willebrand factor, type A |
|
| InterPro |
IPR014836 |
Integrin beta subunit, cytoplasmic |
|
| Gene Ontology(BP) |
GO:0007160 |
cell-matrix adhesion |
|
| Gene Ontology(BP) |
GO:0007155 |
cell adhesion |
|
| Gene Ontology(BP) |
GO:0007275 |
multicellular organismal development |
|
| Gene Ontology(BP) |
GO:0007229 |
integrin-mediated signaling pathway |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0008305 |
integrin complex |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004872 |
receptor activity |
|
| Gene Ontology(MF) |
GO:0005102 |
receptor binding |
|
| Pfam |
PF07974.8 |
EGF-like domain |
6.5e-08 |
| Pfam |
PF00362.13 |
Integrin, beta chain |
3.7e-135 |
| Pfam |
PF13519.1 |
von Willebrand factor type A domain |
0.00017 |
| Pfam |
PF08725.6 |
Integrin beta cytoplasmic domain |
2.5e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB14487-PA |
| C. quinquefasciatus |
CPIJ003836 |
| A. gambiae |
AGAP010233 |
| P. vanderplanki |
Pv.10497 |
| A. aegypti |
AAEL001829 |
| A. aegypti |
AAEL010289 |
| D. melanogaster |
FBgn0010395 |
| B. mori |
BGIBMGA008986-TA |
| T. castaneum |
TC005782 |
| H. melpomene |
HMEL011595-PA |
| D. plexippus |
DPOGS200409PA |