MidgeBase gene description page [Pn.10954]
Outline
| Gene ID | Pn.10954 |
| Type | Protein coding gene |
| Scaffold | PnScaf12479 |
| Start | 9160 |
| End | 10371 |
| Direction | - |
Sequence
Transcript: 591 (bp)
ATGAGTTCCCTTAAGTTGCAGAAGAGGCTTGCAGCCTCGGTATTGAAATGTGGCAAGAAGAAGGTGTGGTTAGATCCAAACGAAACTAACGAAATCGGCAACACAAACTCTCGTCAAAACATTCGCAAATTGATCAAGGACGGTCTCATCATCAAGAAGCCGGTGGTGGTCCACAGTAGATTCCGCGTCCGCAAAGCCACCATTGCTCGTCGCAAGGGTCGTCACTGCGGCTATGGCAAGCGCAAGGGAACAGCAAACGCGAGAATGCCCCAAAAGTTCCTTTGGATGACTCGCATGCGTGTCCTTCGTCGTCTCTTGAAAAAGTACCGCGAAGCCAAGAAGATTGATCGTCATCTCTATCATGATTTGTACATGAAGTCCAAGGGTAATGTCTTCAAAAACAAGCGCGTCTTGATGGAACACATTCACAAGCGTAAGGCAGAAAAGGCTCGCACGAAGATGTTGAACGATCAAGCCGAAGCACGCAGAAACAGAGTTCGTGAAGCCAGAAAACGCCGTGAACAGAGAATTGCTACCAAGAAGCAAGAGCTCTTGCAGACCTACGCCAAGGAAGAGGAAGCCGCGAAGAAG
Protein: 197 (aa)
MSSLKLQKRLAASVLKCGKKKVWLDPNETNEIGNTNSRQNIRKLIKDGLIIKKPVVVHSRFRVRKATIARRKGRHCGYGKRKGTANARMPQKFLWMTRMRVLRRLLKKYREAKKIDRHLYHDLYMKSKGNVFKNKRVLMEHIHKRKAEKARTKMLNDQAEARRNRVREARKRREQRIATKKQELLQTYAKEEEAAKK
| Type | Start | End | Length |
| CDS |
9163 |
9641 |
479 |
| CDS |
9881 |
9987 |
107 |
| CDS |
10367 |
10371 |
5 |
| intron |
9642 |
9880 |
239 |
| intron |
9988 |
10366 |
379 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACI30060 |
ribosomal protein L19 [Anopheles darlingi] |
1e-93 |
| InterPro |
IPR023638 |
Ribosomal protein L19/L19e conserved site |
|
| InterPro |
IPR000196 |
Ribosomal protein L19/L19e |
|
| InterPro |
IPR015974 |
Ribosomal protein L19/L19e, domain 3 |
|
| InterPro |
IPR015972 |
Ribosomal protein L19/L19e, domain 1 |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF10186.4 |
UV radiation resistance protein and autophagy-related subunit 14 |
3.8 |
| Pfam |
PF01280.15 |
Ribosomal protein L19e |
1.5e-63 |
| Pfam |
PF03993.7 |
Domain of Unknown Function (DUF349) |
0.13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ014540 |
| N. vitripennis |
NV16503-PA |
| P. vanderplanki |
Pv.03631 |
| H. sapiens |
ENSP00000463985 |
| T. castaneum |
TC014362 |
| H. sapiens |
ENSP00000464538 |
| D. melanogaster |
FBgn0002607 |
| H. sapiens |
ENSP00000462938 |
| A. gambiae |
AGAP004422 |
| B. mori |
BGIBMGA002572-TA |
| A. aegypti |
AAEL012733 |
| T. castaneum |
TC004131 |
| H. melpomene |
HMEL009068-PA |
| P. humanus |
PHUM617270-PA |
| D. plexippus |
DPOGS201418PA |
| A. mellifera |
GB11299-PA |
| M. musculus |
ENSMUSG00000017404 |
| H. sapiens |
ENSP00000225430 |
| S. invicta |
SI2.2.0_00376 |