MidgeBase gene description page [Pn.10906]
Outline
| Gene ID | Pn.10906 |
| Type | Protein coding gene |
| Scaffold | PnScaf12389 |
| Start | 9017 |
| End | 15692 |
| Direction | - |
Sequence
Transcript: 6000 (bp)
ATGTTCAAAGTGCCAATTATCATTCTAATTTTCTCTGTTCTGAGAGGAGCGGAGTTAAAGACTTTTACCAAATGCGAGATCGCAGAAGAGTTGATAAGAAACCAAAATTTGTCAGTGGCCGAGGCCAAAAAGCACTTGTGCATCATTGGCAGTGCGAATGATACAAATCTGGTCGAGGATGTCTATTTGGGAATTTACAAGATCAGCTCGCAATGGTGGTGTGGAATGAACGGCAAGCGCGCAGGAAATTGCAATTTGAAGTGCGAGCAGCTGCACGATGACGACATCAGCGACGACGTGGTGTGCGCAAGAAAAATTCTGCTCGACTTTGGAACGGAAGGATGGGGACTTGACAAGAGAAAATGTGAACAGGTGTTGAGTGAAATTAACACGACCTGTTTTCTAGATGATTTTTTACGCGAGAAAAAAGAAGCACCGACAACAACAACAGCGGCCCCCGAAATAGCGGCGAGCTTCGAACAACACGAAACTGATCAGAACGTATTTTTCAATATTTTCTCATTCAATATTAACGGAAGCAATCACAAGATCGAATACCATGTCGCATGTGGAGCGGACGCAAAGAGCTACACGCAGTGTGAGCTTTCCGAAGAGCTTTTAACGGTACACAATGTGACAATTAACGATGCACGCAACCTCGTTTGCATTGCGCAGAAATTTTCGCGTCTCAACACGAACGTCGTCGTCGGCGAGCGCTATGGAATTTTCCAAATCAACGAAAAGTTTTGTGGACACAAGAAGGCGGGCGGAGAGTGCAAAATAAAGTGTCATAGTTTGTTGGATGACGACATAAGCGATGATGCAAGGTGTGCTCAAGAGGTCATCGCAAGGCTGGGCTTAAGCGTGGCATGGCGCATCGAGAAGACGCAAGGCTGCCAGAAGGAGCTGAAAAATCTCGAAGAGAATTGCTCGCTCGGTGACCACGGAAATAATCAAAACAATAACAATAATGATGATGCCGCTAATCGCGACCATTGTGAATACGCTAGAAAATTGGTAGCGTCGTATGGCATTTCTAAGTTAGACGCTGTGACATGGTCATGTATCGCAAAGCATCGCTCGCCGAAAACTGGAAATGTGAACTCGAAACTGGCGGCCGGAGGCGATGAAGATGCGGCATGTGTCTTCAAACATGACGTAGAGTGCTCAATAAAAAATCAAAAACTTCGCAGTTCGAGTGGGTTCACGATTTGGCCAGAATACGAAGAGTTTTGCGCGAATCTCTCTGAAAATGACGAAATCGCGAAGAAGTGCTTCTCCTTCGACGAGAGCGAAAGTGATGACAGAAAAACGTTGAAAATCTTCGCGAGCCCGACAACAGAGCGACAGCACTTTACAACATCGACTGATATTTCGGTCATCGTTGAGGAAGACGCGCCAAAAGTGACGACCGAGGCTCAGCCCACAACGGAATTTCTGTCGAAGACGATTGAAAAGCCCGCCAGCGACGAGCAGGACATCATGGTGGAGGGCTACTCGAAGGTCAGAGTGATGTTTTCCGATGCGAGCGTCATCGAGCCAACGGAAGAACTGACGACGACGGCGGAGAAAATTTCAGAGGAAATTTTCAAGGAATCTCTAAAATGTCACTTCACGCGAAACTTTGTTCAGTCGCGCAGCATTCCTCAAAACCTGATTGCCACGTTTGTTTGCATCGCGGAGCATGAGTCACACTTTAATGTCTCATTGATCACCACGAGCGAGAAGTCGCGAAAATATGGACTTTTTCAGATCGACAACGCGCAATATTGTAATACAAACGAAAAAATTAACATCTGTGACACTCTCTGCGAGCACCTCACCGACGATCAGTACGACAATGATTTGGATTGCGCTTTAAAAGTCCATGAGACGGCCGGCTTCGATTATTGGCCGTCGTATGCGCAGCACTGTCAGCAAGTGAGCCAAAGTCTCGTCGAGGACTGCCATGAAACACACAGTACGACTCATCAACCTTACACCATTGTTAATTATGAGCTATTGAAGAAAAAAGTGCTAGAGGAATTAACATCAACAACAACAACGACATTCGTCGATGCTTTAAATGATGAAGAGCAGAGAATAGCGACAACTCCTGTTCTAGTGGGTGAATCACAATCGGTTGTGAGGCAATTTGATGTTTGCGAATTTTCGCAAGAACTTAATGTAAATCAACGCATTGAGCTAAACAAGCTGAATGATTTTGTTTGCATTGCTGACCTAATGACGAAGTTGCGAGTTCAAAAAAACACCGAAAGTACCGATAAAATTGGAATTTTTGGACTCAAATCTGACTCATGCGGTGAAAATGCGGAAATCGGTGGGAGATGCTCGGCCTCGTGCTTGAGTTTCTTCGATGAAAGTCTAACGGAAGTCGTTAAATGTGCATCTAAAATTTATGAAAGCGAATCATTGAGTTACTGGAATTTGACTGATGAAATTTGCAAACCATACAGCAATAAGATTCTCAAGTGCATTCACAAAGGAACCTTCGTTCCGACCGAAGGCATCGATTCTGACGATGAGGATGAGTTCGATGTGATAAACTTCGGAGACCTCAACGAGAGCTCCACAGAGTCCACAGCTGAGGAAAATTCGACAAAGATTGATGAAGAAGAAACTTCAACAGAGGAACTAACTACGAAGGGTGTAAACGACGAAATTTTCCATCAAAGCACAGCTGACCAAGAAAACCTCGATGAACTGCTGACAAATGTTGCATCGGATGATGCAGACGAAACTACTGCGCAGCCACTAGCAGCAGGGATAGATATAGATCAAGAAATCTTGGCACAACTCAACAAAACCTCTGAAAATATCTTAAAACATAACGAACAAAATTTAACGTCTCTGATTTCTGATTTTCTCGAATCTGTAGTGCAAACTTCTGAACTGCCTCAACAGCTTGACTCGGAAACTGTCTCAGAGCCTTCTGAGAGCGATGACGTGATAGAGGAAATTGCAGTAAAGTTGGAGGAAAAACTAAAAGTGAAGCAAGAGTTGACTGAAAACTCGAACGTTGGCCTCACTTTCGATGTAGACGAAACTACTGCGCAGCCACTAGCAACACAGATAGTTATAGAGGAAGAAATCTTGGCACAACTCAACAAAACCATTGAAAATGTCTTAAAACATTTTAAACAAAATTTTACGTCTGAAGAGGAAATTTCTGATTTCCTCGAATCTGAAGTGCAAACTTCTGAACTGCCTCAACAGCTTGACTCGGAAACTGTCTTGGAGCCTTCTGAGAGCGAAGACTTGATTGAGGAAATTACAGTAAAGTTGGAGGAAAAGCTAAAAGTGAAGCAAGAGTTGACTGAAAACTCAAACGTTGACCTCATTTTCGATGCAACGGAGAGAAGCGAAAGTAAGGAAACAAACGAGCAGAGCGATGAGTTGCTTAGCAGTTCCGTCAACCTGGATGTTTTGTCCTCCAAAGCCAATAAAACATTTGAGAGTGAACGCGATGAAAATTCGACACTCGTGAGCACTACGGAGTCGCTCTATTACACAAGTGTGCAGGAGATAATTGACGATTTTGAAGACAAGAATCTCATAAAACGCGAAACGACTCTTTTCCCGGAGAGCGGCGAGGACAATGAGACTACGACCGAAAATGACAATGATGTCGACGTCGTTTATGTCTTCAAACCTACTTACCCACCACCTAGCGAGGGCCATATCGAGAAGTGTGCGCTAGCTCGCTACATGCGGGAATCGACAAAAATACCCTTGAATCTCGTATCGCCGCTCATGTGCATCGCCGAGCATGAGTCAAACCTTAACATTTCGCTGATTCGCAGCGAAGGCGGCAAGACTCGTTACACCCGATATGGCCTCTTCCAAATTGACGACGTAAATTACTGCAACACCAATCAAAAAATCAACAAATGCGACGTCATTTGTCCTCATTTGGTCGACGATCAGCTGGACAACGATCTGCAGTGTGTCATGGACATTTATCGCAGGGAGGGCCTCGAATACTGGCCATCCTACAACAAACACTGCAAAGATGCAAAGTCAATCGACTACTTGAGCATGTGTCGTGAAGTCTTTACCACTACTCACTATCCATACACCTTCTACGACAGAGAGCTCGCCATCCAAAATATTTTCACGACAACGACCACGAGTGCAACCACAACTACTGTCCCGACCACAACCGTCTACATTCCAAAGGCTAATTATACTGATGACGATGGACGCTTCGTGATTAGGCGTTTCGACGATTGCGAATTGACAAACGAAATTTACCAAAACAATGTGACTATCGATGAAGTCTCGAAACTCGTGTGTGTTGGTGATCTGAAATCCGGCTTAAAAATAAGAAAGCCAAATGAAGACGAAATGCATTTTGGAATTTTTTCGATTAACAACACTTTTTGTGGAGAAGGCGGCGTCTGCGGCATCGAGTGCTCTCAACTGTTGGACGATGACATAACGGACGACATTTTGTGCGCCAAGATAATCCTCGAAAGCGACGAAGTCAGTGCCTGGAAATTGTCTGAAGAAGAATGCAAGCCATATGGCGCAAAATTACTGGAATGTGCCGATGAGGGCCACGTGCAAACGACCAGAGATCCAGAAAATGCAGAAATCACGCCTTGGTCGGGTTTCTCTTACACAACTGCCGCCTCGCCGATGACAAAGGAACCGTTTAGCTACAAGCCAAACAAGTATGTGTACTTCGAAGACTACTACACGCCTGCAACGACAAAGTACACGACACCACACGACCTTGGAGACTTGGACTTTTTGGCTGTTTTGACGTCTGAGAATCCTCTACCGACTCGCAGCACAACAACCGAACAAACCACTAGCACAACTACCAGCAGTGAAAAGCCTGTTACTCTTTCAGCGTTTCTCGAGCCGCCACATTTGAGCACAGCGTCCGACGACGACGAAATCGTAGAAGCGAAGACCGAGGCTTCGGTGAAACACATTGATAGCGAGCCGAATGCTTCAGAGGACATCGAATTGACCACCACTAGCATTACTGAGGAGGAATTGAAGCGAATAGTCAAAGATGTCATTGCACCGCCTCAGCAAGTTCTGTTTCTGCCGAAGGAAAAATTCGCCGATGAAATTGAGGAAGAATTCGAGATTGAAAAGCTAAGAAGTGAGGAGACGACAGAACTGTCCGAAACTGAAACTACAACCGTTACGTCGAGAATTGACACAAAAAACAATGAGGAATCAAATGAGGTGCCAGAAACTGGTGAATCGACCGAAAAACCTTTGCAAAAAGACCTAGAGAGCGGCAAAATAATTTCGTTGCATCAGTCGTTGCTTCCCCCGCACGATATCGTTGCGATCACGGAGGAGGAGACGGAAAAACCAGAGTTTAAGATTATCGTTGAAAGTGGAGAAATTAATTCAGCTGAGGATGTTGTGAAAGAGAAGGAGAGCTCCGAAGCAGTTACGCTGAGTTCTGAAAGTTTGCTGATGCATGAGAGTGTTGGCAGCGACGAACAGACGTCTGAAAGTTCATCGAAAAATGCAGACGAAGTGAGTACAACAGTGATTCCAGAAACAACACCATCATCGAGCACAATACCATACTTCCGACTGAAGTCACGAACCACTACGGAAGCTCCAGCGACGACACAAACTCACCAGGATTTTAAAGAACAAAATATTCAAAACTCAGCTGAAGAAGTAGAGATAACTTTGACGACTGCATCAACGGAAACGGCAATTGAAACAACTACAGAAAAAGAAGTCATCTCTTCGAGAATAATTGGAACTTTGATGACCGCAGCAACATCAGAAGCGCCAGAGTCAAGCGAGGATGACAATGATGAGCCGAAAATTCCGCAAATCATTCTGAACGACCAGAACCTAACGAATCAAGTTAAATCGATATTGAAGGCGCACTCTGGCACTAAAAACAGCACAAAGCCTATCGTCTTTAATATTTTCAATTTCAACATCGCTGGCCAGAATCACGAGATAAATTACGCGATAGATGGAAACAAACAAAAGCAGCCGCAGAAACCT
Protein: 2000 (aa)
MFKVPIIILIFSVLRGAELKTFTKCEIAEELIRNQNLSVAEAKKHLCIIGSANDTNLVEDVYLGIYKISSQWWCGMNGKRAGNCNLKCEQLHDDDISDDVVCARKILLDFGTEGWGLDKRKCEQVLSEINTTCFLDDFLREKKEAPTTTTAAPEIAASFEQHETDQNVFFNIFSFNINGSNHKIEYHVACGADAKSYTQCELSEELLTVHNVTINDARNLVCIAQKFSRLNTNVVVGERYGIFQINEKFCGHKKAGGECKIKCHSLLDDDISDDARCAQEVIARLGLSVAWRIEKTQGCQKELKNLEENCSLGDHGNNQNNNNNDDAANRDHCEYARKLVASYGISKLDAVTWSCIAKHRSPKTGNVNSKLAAGGDEDAACVFKHDVECSIKNQKLRSSSGFTIWPEYEEFCANLSENDEIAKKCFSFDESESDDRKTLKIFASPTTERQHFTTSTDISVIVEEDAPKVTTEAQPTTEFLSKTIEKPASDEQDIMVEGYSKVRVMFSDASVIEPTEELTTTAEKISEEIFKESLKCHFTRNFVQSRSIPQNLIATFVCIAEHESHFNVSLITTSEKSRKYGLFQIDNAQYCNTNEKINICDTLCEHLTDDQYDNDLDCALKVHETAGFDYWPSYAQHCQQVSQSLVEDCHETHSTTHQPYTIVNYELLKKKVLEELTSTTTTTFVDALNDEEQRIATTPVLVGESQSVVRQFDVCEFSQELNVNQRIELNKLNDFVCIADLMTKLRVQKNTESTDKIGIFGLKSDSCGENAEIGGRCSASCLSFFDESLTEVVKCASKIYESESLSYWNLTDEICKPYSNKILKCIHKGTFVPTEGIDSDDEDEFDVINFGDLNESSTESTAEENSTKIDEEETSTEELTTKGVNDEIFHQSTADQENLDELLTNVASDDADETTAQPLAAGIDIDQEILAQLNKTSENILKHNEQNLTSLISDFLESVVQTSELPQQLDSETVSEPSESDDVIEEIAVKLEEKLKVKQELTENSNVGLTFDVDETTAQPLATQIVIEEEILAQLNKTIENVLKHFKQNFTSEEEISDFLESEVQTSELPQQLDSETVLEPSESEDLIEEITVKLEEKLKVKQELTENSNVDLIFDATERSESKETNEQSDELLSSSVNLDVLSSKANKTFESERDENSTLVSTTESLYYTSVQEIIDDFEDKNLIKRETTLFPESGEDNETTTENDNDVDVVYVFKPTYPPPSEGHIEKCALARYMRESTKIPLNLVSPLMCIAEHESNLNISLIRSEGGKTRYTRYGLFQIDDVNYCNTNQKINKCDVICPHLVDDQLDNDLQCVMDIYRREGLEYWPSYNKHCKDAKSIDYLSMCREVFTTTHYPYTFYDRELAIQNIFTTTTTSATTTTVPTTTVYIPKANYTDDDGRFVIRRFDDCELTNEIYQNNVTIDEVSKLVCVGDLKSGLKIRKPNEDEMHFGIFSINNTFCGEGGVCGIECSQLLDDDITDDILCAKIILESDEVSAWKLSEEECKPYGAKLLECADEGHVQTTRDPENAEITPWSGFSYTTAASPMTKEPFSYKPNKYVYFEDYYTPATTKYTTPHDLGDLDFLAVLTSENPLPTRSTTTEQTTSTTTSSEKPVTLSAFLEPPHLSTASDDDEIVEAKTEASVKHIDSEPNASEDIELTTTSITEEELKRIVKDVIAPPQQVLFLPKEKFADEIEEEFEIEKLRSEETTELSETETTTVTSRIDTKNNEESNEVPETGESTEKPLQKDLESGKIISLHQSLLPPHDIVAITEEETEKPEFKIIVESGEINSAEDVVKEKESSEAVTLSSESLLMHESVGSDEQTSESSSKNADEVSTTVIPETTPSSSTIPYFRLKSRTTTEAPATTQTHQDFKEQNIQNSAEEVEITLTTASTETAIETTTEKEVISSRIIGTLMTAATSEAPESSEDDNDEPKIPQIILNDQNLTNQVKSILKAHSGTKNSTKPIVFNIFNFNIAGQNHEINYAIDGNKQKQPQKP
| Type | Start | End | Length |
| CDS |
9020 |
10827 |
1808 |
| CDS |
11032 |
13149 |
2118 |
| CDS |
13232 |
14742 |
1511 |
| CDS |
15130 |
15692 |
563 |
| intron |
10828 |
11031 |
204 |
| intron |
13150 |
13231 |
82 |
| intron |
14743 |
15129 |
387 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR28988 |
hypothetical protein AND_02410 [Anopheles darlingi] |
6e-32 |
| InterPro |
IPR001916 |
Glycoside hydrolase, family 22 |
|
| InterPro |
IPR019799 |
Glycoside hydrolase, family 22, conserved site |
|
| InterPro |
IPR023346 |
Lysozyme-like domain |
|
| Pfam |
PF01464.15 |
Transglycosylase SLT domain |
7.1e-06 |
| Pfam |
PF00062.15 |
C-type lysozyme/alpha-lactalbumin family |
8.3e-95 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04077 |