MidgeBase gene description page [Pn.10905]
Outline
| Gene ID | Pn.10905 |
| Type | Protein coding gene |
| Scaffold | PnScaf12389 |
| Start | 7416 |
| End | 8554 |
| Direction | + |
Sequence
Transcript: 861 (bp)
ATGGAGGCAAAACGAAACGTCACGCTGATGCTGCTCTCGCTTATGTTGATATCGCTCGCGGAGGCCAATTTGATTTACAACAAGCATTTTCCCATCGAGAATGTCGTTAATAGAAACTTTACTCGTTTCACGCGAATTGTCGGCGGCAGCAGTGCAAATGTCGCACAGTTTCCGCACGCGGCCGCACTCTTCCTCTTCCTACCCAACGGAGAGTCCTTCTGTGGCGGTTCCATCATCCACTACATGTACATTCTGACGGCGGCTCACTGTCTGGACGACATCACAAAGATAGAGGTGCAGGCCGGAACGCTCAACATTTTCCAGGGCGTGCCGCAGTATCGCGCCACAGTGCAACCAAGCCACACGCGTCAGCACGATCAATATGACCGCGATACGCTGCTCAACGACATCGGACTCATTTACCTCGACCAGCATATTCGATTTACGACGACCATGCAGCCGATCGCACTTCCGCCTCGATCGAGCGTCGGACAGGCGTTTCTCAATCAATCGCCCACGACAATCGGATGGGGTCGCTTCGAGGACTCCAAGCAAACACTCTCCGATACGTTGCGATTTGTGCGATTGCCAATTGTGCAGGACTCGCAGTGCACATCCGTCTACAATCAGTTCTTTCCCTTCTATCAGGCACGAACGAACATCTGTGCATCGGGAAACAATGGCAGAAGCACGTGTAACGGTGACTCAGGAGGCTCAATGTCGCTAACCTTAAATGGCCGGCCAACTTTGATCGGAATCGTCAGCTTTGGCAGTTCGACGTGCGAAGGAGGTTTTCCAGTAGCAATGACTCGCGTCACCGCCTATCTTGATTGGATCGCTCGCAACTCAGTATTGCGATGT
Protein: 287 (aa)
MEAKRNVTLMLLSLMLISLAEANLIYNKHFPIENVVNRNFTRFTRIVGGSSANVAQFPHAAALFLFLPNGESFCGGSIIHYMYILTAAHCLDDITKIEVQAGTLNIFQGVPQYRATVQPSHTRQHDQYDRDTLLNDIGLIYLDQHIRFTTTMQPIALPPRSSVGQAFLNQSPTTIGWGRFEDSKQTLSDTLRFVRLPIVQDSQCTSVYNQFFPFYQARTNICASGNNGRSTCNGDSGGSMSLTLNGRPTLIGIVSFGSSTCEGGFPVAMTRVTAYLDWIARNSVLRC
| Type | Start | End | Length |
| CDS |
7416 |
7962 |
547 |
| CDS |
8112 |
8264 |
153 |
| CDS |
8323 |
8412 |
90 |
| CDS |
8481 |
8551 |
71 |
| intron |
7963 |
8111 |
149 |
| intron |
8265 |
8322 |
58 |
| intron |
8413 |
8480 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAA72958 |
chymotrypsin-like protease [Helicoverpa armigera] |
3e-40 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF09342.6 |
Domain of unknown function (DUF1986) |
0.014 |
| Pfam |
PF00089.21 |
Trypsin |
7e-46 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04076 |
| T. castaneum |
TC002767 |
| T. castaneum |
TC002766 |