MidgeBase gene description page [Pn.10883]
Outline
| Gene ID | Pn.10883 |
| Type | Protein coding gene |
| Scaffold | PnScaf12344 |
| Start | 52631 |
| End | 65490 |
| Direction | + |
Sequence
Transcript: 1701 (bp)
ATGGTCGAAGAGGGCAATCAAGATGACAGTGATAATAACAATAATTGTGGCTCGAGCAGTGACAGTGAGAGTCATGTAATTTTGACCAGGCGCGACATTCTTTTGCGAACGAAGAAGCAGTACCGATCGATTGCCGTCGACTTAGTGCAGTTCCTTATCAGGTACCGCTATGAAAATAATCAGCATAGGCGCTTAGCGGACGAGGATGACGAGCTATCAGAAGTGCAGCCAGACGCTGTGCCGCCAGAGGTTCGCGAGTGGCTGGCATCGACATTCACCCGACAGCTGGCGACGACACGCAAGAAAAGCGACGAGAAGCCAAAATTTCGTTCGGTGGCGCACGCAATTCGGGCCGGAATTTTCGTTGATCGCATTTATCGACGCGTATCGAGCACGGCACTCATGCAATTTCCACCAGAAGTTGTAAAAGTTCTGAAGCATCTCGATGAATGGTCGTTTGATGTATTCGCACTGGCCGAGTCAGGAAATTGTCAGCCCGTAAAATATGTCGGCTACGATCTACTCAATCGATATGGCATGATACATAAATTCAAAGTACCGTCAGCAACATTGGAAACGTTTCTGACACGAATCGAAGAAGGATATTGCCGCTTTCGTAATCCCTATCACAATAACTTGCACGCGGCAGACGTCGCTCAAACGGTGCACCACGTCCTCTGTCAGACGGGACTGATGCACTGGCTGTCGGATTTGGAGATATTTGCGACGCTGGTCGCGGCACTCATACACGACTACGAGCACACGGGAACGACCAACAACTTTCACGTGATGTCGGGCTCGGACACGGCCATGCTCTACAACGATCGCGCAGTGCTCGAAAATCATCACATAAGTGCGGCCTTTCGCGTCCTCAAGGACGACGACTGCAACATTCTCCAGAACTTGTCGCGCGACGAGTATCGGGAGCTGAGGACGCTGATAATCGATATGGTGCTTGCAACGGACATGTCCTTTCACTTTCAGCAGCTGAAGAACATGCGCAATCTGCTGACGCTGGCCGAGCCGAGCGTCGACAAGTCGAAGGCGATGTCGCTCGTGCTGCACTGCTGCGACATCTCGCACCCGGCGAAGAAGTGGGACCTCCACCACAAGTGGACGATGCTCCTGCTCGAGGAGTTCTTCCGGCAGGGCGACCTCGAGCGCGAACTTGGCCTCCCCTTCAGCCCGCTCTGCGACCGCAACAACACGCTCGTGGCGGAGTCGCAGATCGGCTTCATAGAGTTCATCGTGGAGCCGAGCATGGCCGTGTGCTCGGACATGCTGGAGACAATTTTAGCACCAATCGCACCGATTACCAATAACAATAGCAACAACAATAACAGTAGCAGTAGTAACAATAGTTTTAGTAGCAAAGCGATTTCGTCGGTGAGCGAGGACAACGCCGCCCATTCCCTGAGCGTGCCCGGCCCGGACGGAGGCAGCGGCTCGAACAGCGAAGCAATAGTTAGTACGAAGGGCAAGTCGGCGGTCGACGAGGTGAAAAACGAGTGCGAGAAACCGACCCGATTCAAGATCAAGAAGCCGTGGACGACGTGCTTGGCCGAAAACAAAAAGATTTGGAAGGATCAAGCGGTTAAAGATGCCGAGGCACGAGCAGCAGCAGTTGCGGCGGCGGCGGCCGCTGAGAAGGAAGAAAAAGAAAAGTGTATCGCATTACAGAACGAGTCGCAGTCCGAAGAG
Protein: 567 (aa)
MVEEGNQDDSDNNNNCGSSSDSESHVILTRRDILLRTKKQYRSIAVDLVQFLIRYRYENNQHRRLADEDDELSEVQPDAVPPEVREWLASTFTRQLATTRKKSDEKPKFRSVAHAIRAGIFVDRIYRRVSSTALMQFPPEVVKVLKHLDEWSFDVFALAESGNCQPVKYVGYDLLNRYGMIHKFKVPSATLETFLTRIEEGYCRFRNPYHNNLHAADVAQTVHHVLCQTGLMHWLSDLEIFATLVAALIHDYEHTGTTNNFHVMSGSDTAMLYNDRAVLENHHISAAFRVLKDDDCNILQNLSRDEYRELRTLIIDMVLATDMSFHFQQLKNMRNLLTLAEPSVDKSKAMSLVLHCCDISHPAKKWDLHHKWTMLLLEEFFRQGDLERELGLPFSPLCDRNNTLVAESQIGFIEFIVEPSMAVCSDMLETILAPIAPITNNNSNNNNSSSSNNSFSSKAISSVSEDNAAHSLSVPGPDGGSGSNSEAIVSTKGKSAVDEVKNECEKPTRFKIKKPWTTCLAENKKIWKDQAVKDAEARAAAVAAAAAAEKEEKEKCIALQNESQSEE
| Type | Start | End | Length |
| CDS |
52631 |
52818 |
188 |
| CDS |
61963 |
62212 |
250 |
| CDS |
63086 |
63248 |
163 |
| CDS |
64317 |
65315 |
999 |
| CDS |
65387 |
65487 |
101 |
| intron |
52819 |
61962 |
9144 |
| intron |
62213 |
63085 |
873 |
| intron |
63249 |
64316 |
1068 |
| intron |
65316 |
65386 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001867628 |
calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase [Culex quinquefasciatus] gb|EDS45360.1| calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR002073 |
3'5'-cyclic nucleotide phosphodiesterase, catalytic domain |
|
| InterPro |
IPR023174 |
3'5'-cyclic nucleotide phosphodiesterase, conserved site |
|
| InterPro |
IPR023088 |
3'5'-cyclic nucleotide phosphodiesterase |
|
| InterPro |
IPR013706 |
3'5'-cyclic nucleotide phosphodiesterase N-terminal |
|
| InterPro |
IPR003607 |
HD/PDEase domain |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(MF) |
GO:0004114 |
3',5'-cyclic-nucleotide phosphodiesterase activity |
|
| Gene Ontology(MF) |
GO:0008081 |
phosphoric diester hydrolase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF08499.7 |
3'5'-cyclic nucleotide phosphodiesterase N-terminal |
5.9e-29 |
| Pfam |
PF00233.14 |
3'5'-cyclic nucleotide phosphodiesterase |
1.9e-88 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000448519 |
| H. sapiens |
ENSP00000410309 |
| H. sapiens |
ENSP00000331574 |
| P. vanderplanki |
Pv.03964 |
| H. sapiens |
ENSP00000243052 |
| H. sapiens |
ENSP00000408874 |
| D. plexippus |
DPOGS201309PA |
| M. musculus |
ENSMUSG00000004347 |
| M. musculus |
ENSMUSG00000059173 |
| D. melanogaster |
FBgn0264815 |
| H. sapiens |
ENSP00000379496 |
| C. quinquefasciatus |
CPIJ017213 |
| H. sapiens |
ENSP00000379487 |
| A. mellifera |
GB13690-PA |
| H. sapiens |
ENSP00000318105 |
| H. sapiens |
ENSP00000309269 |
| B. mori |
BGIBMGA003099-TA |
| H. sapiens |
ENSP00000387037 |
| A. gambiae |
AGAP008967 |
| H. sapiens |
ENSP00000439938 |
| H. sapiens |
ENSP00000379485 |
| P. humanus |
PHUM464080-PA |
| H. sapiens |
ENSP00000386767 |
| H. melpomene |
HMEL017263-PA |
| N. vitripennis |
NV11132-PA |
| A. aegypti |
AAEL010539 |
| H. sapiens |
ENSP00000379494 |
| H. sapiens |
ENSP00000350858 |
| M. musculus |
ENSMUSG00000022489 |
| S. invicta |
SI2.2.0_10466 |
| H. sapiens |
ENSP00000329112 |
| H. sapiens |
ENSP00000442559 |