MidgeBase gene description page [Pn.10878]
Outline
| Gene ID | Pn.10878 |
| Type | Protein coding gene |
| Scaffold | PnScaf12344 |
| Start | 20977 |
| End | 23148 |
| Direction | - |
Sequence
Transcript: 1791 (bp)
ATGAAGTCGATTCTCGTTGTGCTTTTAATTGCAGGCGTTGGACTGGCAGCCGAGGAGGACTGGTACAAGACAGCCAACTTCTACCAAATTTACCCGAGGAGCTTCAAAGACTCCGACAACGATGGGGTCGGTGACCTCGAGGGAATAATTTCAAAGCTGGATTACTTGAAGGAGCTCGGCGTTACGGCGACGTGGCTGAGTCCGATTTTAGAGAGTCCTCAAGCAGATTTCGGATATGACATTGCTGACTTTAAGAACGTCGATCCATTGTTCGGAACGAATGCCCAACTCGAGAGAATGTTCAGCGAGGCCAAGAAATTGGGCATCAAAATCATTATGGACTTTGTGCCGAACCACACATCGGATGAGCACGAATGGTTCAAGATATCGCTAAACACCAGCCATCCCGAGCATGCCAAATATAGAGACTATTACGTGTGGCACAACGGTACGACAAATCCTGAAGGCGGTACGCCATTGCCACCAAACAACTGGCAAGCCGTGTTCGGAACAATTGCGTGGACATGGAGACCAGAACGCAGTCAATACTACTTGCACCAGTTCCATCCCAAGCAACCCGACTTGAACTACCGAAACCCCGATGTTGTGCAGGAAATGAAGGACGTTCTCACCTACTGGATGGAGAAGGGAGCTGACGGTTTCCGTATTGATGCGATAAACCACTTGTTCGAGGTAGAAGATTTCCGAGATGAGCCCCTTACAAATTGGACCAGCGACCCAACAAACTACGGCTACACTCATCACTATTACACTAAGGATTTGGACGAAATGTACGACATGGTGAGACAATGGAGAGAATTGATCGACAAGTACAACAAGGACCATCCCGGCTCCACAAGAGTCATCTTCACCGAGGCCTATGCAAATCTCACTTTCACAATGCGCTACTATGGCAACGCCTCGCACCCGATTTCGCATTTCCCATTCAATTTCCTCATGATTGAGAAACTCGATGAGTCCAAGAAGGCTAGCGACTTTAAGAGGGAGATTGACGAGTGGATTAACAACATTCCTGCTGGCGCAACATCAAACTGGGTGCTCGGAAACCACGACAAGCCACGTGTCGGCTCGCGCTATGGCGTCGACCGAGTCGACGGTATGCTGATGCTCTTGCTGCTGCTCCCGGGAGTCGCAGTCACCTACAATGGTGACGAGATCGGCATGCTTGACTACCGCGATGGAATCACTTTTGAACAGACGCGTGATCCACAGGGCTGCAACGCCGGTAGAGATAATTTCAAGTGGGCGTCGAGAGATCCGGAGCGAACGCCATTCCAGTGGGACAACTCAACGTTTGCTGGTTTTTGTGAGCAATGCAACGCAACATGGCTCCCAGTTCACAGCAACTACAAGGACCTCAACCTGGCGAAGCAGCGAGCCGAAGAGAAGAGCTTCTTCAAGTTCTACAAGCAACTGTCGGAGTTGCGCAACGACGAGATCTTCAAAAATGGCATCTTCGTTTCGAAGGCCTACAACGACGACGTCTTTGCCTTCAAGAGAACTTACAACAATGAATCCTATGTCGTTCTCATCAACTTCGGCAACGAAACGCACACAATTGATGTTAGCGAGCTGAATGTTGATTTCGAGGGCCGTTCTCAGGTTGTTCTGGCCGGATCTCGCACGAGCTACAATGTCGGTGACTTTGGATCAACGACTGGCTTCATTTTGAATAAATACGACTCAGTTGTGCTGAAGAGCAAGGCATCCACCTTGATTGCCAGCTTCGTTGTATTTTTGTCGGCATTCTTGCTGAAGCTTCTCTTCAAC
Protein: 597 (aa)
MKSILVVLLIAGVGLAAEEDWYKTANFYQIYPRSFKDSDNDGVGDLEGIISKLDYLKELGVTATWLSPILESPQADFGYDIADFKNVDPLFGTNAQLERMFSEAKKLGIKIIMDFVPNHTSDEHEWFKISLNTSHPEHAKYRDYYVWHNGTTNPEGGTPLPPNNWQAVFGTIAWTWRPERSQYYLHQFHPKQPDLNYRNPDVVQEMKDVLTYWMEKGADGFRIDAINHLFEVEDFRDEPLTNWTSDPTNYGYTHHYYTKDLDEMYDMVRQWRELIDKYNKDHPGSTRVIFTEAYANLTFTMRYYGNASHPISHFPFNFLMIEKLDESKKASDFKREIDEWINNIPAGATSNWVLGNHDKPRVGSRYGVDRVDGMLMLLLLLPGVAVTYNGDEIGMLDYRDGITFEQTRDPQGCNAGRDNFKWASRDPERTPFQWDNSTFAGFCEQCNATWLPVHSNYKDLNLAKQRAEEKSFFKFYKQLSELRNDEIFKNGIFVSKAYNDDVFAFKRTYNNESYVVLINFGNETHTIDVSELNVDFEGRSQVVLAGSRTSYNVGDFGSTTGFILNKYDSVVLKSKASTLIASFVVFLSAFLLKLLFN
| Type | Start | End | Length |
| CDS |
20980 |
21537 |
558 |
| CDS |
21722 |
22171 |
450 |
| CDS |
22235 |
22342 |
108 |
| CDS |
22412 |
22591 |
180 |
| CDS |
22654 |
23148 |
495 |
| intron |
21538 |
21721 |
184 |
| intron |
22172 |
22234 |
63 |
| intron |
22343 |
22411 |
69 |
| intron |
22592 |
22653 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001863694 |
alpha-glucosidase [Culex quinquefasciatus] gb|EDS38952.1| alpha-glucosidase [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR006589 |
Glycosyl hydrolase, family 13, subfamily, catalytic domain |
|
| InterPro |
IPR013780 |
Glycosyl hydrolase, family 13, all-beta |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR006048 |
Alpha-amylase, C-terminal all beta |
|
| InterPro |
IPR015902 |
Glycoside hydrolase, family 13 |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| InterPro |
IPR006047 |
Glycosyl hydrolase, family 13, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00128.19 |
Alpha amylase, catalytic domain |
6.3e-93 |
| Pfam |
PF02806.13 |
Alpha amylase, C-terminal all-beta domain |
0.00011 |
| Pfam |
PF06844.6 |
Protein of unknown function (DUF1244) |
0.026 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.01317 |
| Pn.04640 |
| Pn.09502 |
| Pn.09501 |
| Pn.02321 |
| Pn.10881 |
| Pn.10880 |
| Pn.10879 |
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ005208 |
| B. mori |
BGIBMGA006066-TA |
| A. aegypti |
AAEL010536 |
| P. vanderplanki |
Pv.11006 |
| A. aegypti |
AAEL009524 |
| C. quinquefasciatus |
CPIJ013169 |
| N. vitripennis |
NV16404-PA |
| D. melanogaster |
FBgn0002569 |
| A. aegypti |
AAEL000651 |
| A. gambiae |
AGAP002102 |
| D. melanogaster |
FBgn0002571 |
| A. aegypti |
AAEL000392 |
| A. gambiae |
AGAP008964 |
| P. vanderplanki |
Pv.11007 |
| A. mellifera |
GB19017-PA |
| D. melanogaster |
FBgn0050359 |
| C. quinquefasciatus |
CPIJ019693 |
| C. quinquefasciatus |
CPIJ013173 |
| C. quinquefasciatus |
CPIJ019692 |
| A. aegypti |
AAEL010537 |
| H. sapiens |
ENSP00000387337 |
| B. mori |
BGIBMGA003057-TA |
| A. aegypti |
AAEL010540 |
| C. quinquefasciatus |
CPIJ005212 |
| H. melpomene |
HMEL013861-PA |
| T. castaneum |
TC008359 |
| C. quinquefasciatus |
CPIJ010128 |
| A. aegypti |
AAEL000667 |
| C. quinquefasciatus |
CPIJ019691 |
| P. vanderplanki |
Pv.11004 |
| H. sapiens |
ENSP00000386954 |
| N. vitripennis |
NV12204-PA |
| D. melanogaster |
FBgn0002570 |
| D. melanogaster |
FBgn0032381 |
| H. sapiens |
ENSP00000386709 |
| H. melpomene |
HMEL014742-PA |
| S. invicta |
SI2.2.0_00822 |
| A. gambiae |
AGAP012399 |
| A. aegypti |
AAEL003434 |
| A. aegypti |
AAEL014710 |
| D. melanogaster |
FBgn0033297 |
| S. invicta |
SI2.2.0_00797 |
| A. gambiae |
AGAP012401 |
| D. plexippus |
DPOGS201891PA |
| D. plexippus |
DPOGS201308PA |
| N. vitripennis |
NV12203-PA |
| A. aegypti |
AAEL010532 |
| C. quinquefasciatus |
CPIJ005213 |
| P. vanderplanki |
Pv.03963 |
| P. vanderplanki |
Pv.03121 |
| A. aegypti |
AAEL000678 |
| C. quinquefasciatus |
CPIJ019689 |
| B. mori |
BGIBMGA003055-TA |
| N. vitripennis |
NV11134-PA |
| P. vanderplanki |
Pv.03961 |
| D. melanogaster |
FBgn0050360 |
| D. melanogaster |
FBgn0033296 |
| C. quinquefasciatus |
CPIJ013171 |
| C. quinquefasciatus |
CPIJ005210 |
| P. vanderplanki |
Pv.01814 |
| N. vitripennis |
NV16403-PA |
| D. plexippus |
DPOGS201306PA |
| H. sapiens |
ENSP00000387308 |
| H. sapiens |
ENSP00000386620 |
| A. gambiae |
AGAP008961 |
| C. quinquefasciatus |
CPIJ018570 |
| D. plexippus |
DPOGS210044PA |
| P. vanderplanki |
Pv.03962 |
| D. plexippus |
DPOGS201893PA |
| D. melanogaster |
FBgn0032382 |
| A. gambiae |
AGAP006019 |
| A. mellifera |
GB12607-PA |
| H. sapiens |
ENSP00000386677 |
| P. humanus |
PHUM308690-PA |
| C. quinquefasciatus |
CPIJ016362 |
| H. sapiens |
ENSP00000260649 |
| D. melanogaster |
FBgn0033294 |
| B. mori |
BGIBMGA003056-TA |
| C. quinquefasciatus |
CPIJ012204 |
| A. gambiae |
AGAP008965 |
| C. quinquefasciatus |
CPIJ019690 |
| T. castaneum |
TC008358 |
| A. mellifera |
GB20070-PA |
| A. gambiae |
AGAP008962 |
| T. castaneum |
TC008357 |
| N. vitripennis |
NV11133-PA |
| C. quinquefasciatus |
CPIJ013170 |
| A. aegypti |
AAEL000647 |
| D. plexippus |
DPOGS201307PA |
| M. musculus |
ENSMUSG00000024131 |
| S. invicta |
SI2.2.0_00354 |
| A. gambiae |
AGAP012400 |
| C. quinquefasciatus |
CPIJ013172 |
| A. aegypti |
AAEL000642 |