MidgeBase gene description page [Pn.10855]
Outline
| Gene ID | Pn.10855 |
| Type | Protein coding gene |
| Scaffold | PnScaf12287 |
| Start | 16730 |
| End | 17640 |
| Direction | + |
Sequence
Transcript: 708 (bp)
ATGAGTGGAAGGGTGGCGATTGTGGGAGGACAAGTTTCAACTATCAACCAATTTCCACACTTGGGAGTTTACTACAGCAACAAGGAGTTTGTGTGCTCGGCTTCGATTTTGTCAACCACTTTCGCAATAACTGCTGCTCATTGTACATACTTTTTCCCATGGAGCATACAACTTCGCTTTGGATCATCGTTCCGCGATCGAGATGGTTTGGTTGTGAACGTGATGAAGTTTTATCAGAACCCAAACTTCAACATAAAAACTTACGATTTTGATGTATCACTTCTTAAGTTCTCGGCACCGATACGGTTCGCGAGAAACATTGTTCCAATAAGGCTTCCTCAAAGTATCGATGACGATCTCAATTTTCGCACATCAGTCAGAATTGCAGGATGGGGACTGCAGGCCTATGACGATATGAATGAACCGCCAATTCAATTAATGTCGACGGTGGTGCAAGTTTCTGATTTTCGAAATTGCTCGAGAAACTATCGAGCTGTGTCACAGGAAATAACCGAGCGAATGTTTTGTGCTTCAAGCGGCAATCGTGACGCATGCTTAGGAGATTCCGGCGGGTCGCTGGTCTTTAATGACACCCTATATGGTCTGGTTTCTTTTGGATATGGATGTGCGATGGCAGACTATCCTGGAGTGTATACTAAAATTTCATCATTGCTTCCGTGGATAAGGAGAACTCTTCAGTTATTTTCT
Protein: 236 (aa)
MSGRVAIVGGQVSTINQFPHLGVYYSNKEFVCSASILSTTFAITAAHCTYFFPWSIQLRFGSSFRDRDGLVVNVMKFYQNPNFNIKTYDFDVSLLKFSAPIRFARNIVPIRLPQSIDDDLNFRTSVRIAGWGLQAYDDMNEPPIQLMSTVVQVSDFRNCSRNYRAVSQEITERMFCASSGNRDACLGDSGGSLVFNDTLYGLVSFGYGCAMADYPGVYTKISSLLPWIRRTLQLFS
| Type | Start | End | Length |
| CDS |
16730 |
16865 |
136 |
| CDS |
16939 |
17361 |
423 |
| CDS |
17427 |
17434 |
8 |
| CDS |
17497 |
17637 |
141 |
| intron |
16866 |
16938 |
73 |
| intron |
17362 |
17426 |
65 |
| intron |
17435 |
17496 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EEZ99284 |
serine protease P27 [Tribolium castaneum] |
2e-38 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00089.21 |
Trypsin |
6e-49 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.12770 |
| D. melanogaster |
FBgn0035795 |