MidgeBase gene description page [Pn.10835]
Outline
| Gene ID | Pn.10835 |
| Type | Protein coding gene |
| Scaffold | PnScaf12234 |
| Start | 19080 |
| End | 19731 |
| Direction | - |
Sequence
Transcript: 393 (bp)
ATGAGCAGCGACGAGGAAGCGACGCGGTGGAATTTCGGCGAGAGCAAGAAAATTGTCGAGTTCGCGTTGAATGTGAAGAAAGGCATGTGTTCGTCGCTGAGCGACATGAACACGGCGAAATTGAATGTGACAATAGAGGGAAGCGCCGAAGATCTCGGCATACTGATGAAACTCCATCCGTCACTCAACACGCCACATCACGACTCGGAGCTGTGCGAAATCCTCCAAGTGTCGTCGGTTCTCCTGAGGCAGTCGCCATCGAGCGAGATGAAAATATCACACGAGACATCGACGGATGAGTTCTGTCCGCGTTGCAGGCGCTTCAAAGTTTCCACGGCTGATATTTGCATGCGATGCAGCGACGTCTTGAAGTCGAGGGACGCGTCAATGTCA
Protein: 131 (aa)
MSSDEEATRWNFGESKKIVEFALNVKKGMCSSLSDMNTAKLNVTIEGSAEDLGILMKLHPSLNTPHHDSELCEILQVSSVLLRQSPSSEMKISHETSTDEFCPRCRRFKVSTADICMRCSDVLKSRDASMS
| Type | Start | End | Length |
| CDS |
19083 |
19307 |
225 |
| CDS |
19564 |
19731 |
168 |
| intron |
19308 |
19563 |
256 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002095250 |
GE22294 [Drosophila yakuba] gb|EDW94962.1| GE22294 [Drosophila yakuba] |
6e-16 |
| Pfam |
PF02132.10 |
RecR protein |
1.8 |
| Pfam |
PF01529.15 |
DHHC palmitoyltransferase |
0.034 |
| Pfam |
PF06827.9 |
Zinc finger found in FPG and IleRS |
0.064 |
| Pfam |
PF12773.2 |
Double zinc ribbon |
0.039 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes