MidgeBase gene description page [Pn.10776]
Outline
| Gene ID | Pn.10776 |
| Type | Protein coding gene |
| Scaffold | PnScaf12149 |
| Start | 9357 |
| End | 10091 |
| Direction | + |
Sequence
Transcript: 732 (bp)
ATGTCCGACGAAGTAGATAATAAGTTCAATTTAGCCGCCAACTACATCCAGTCACATCATCAGGAATTCAACAAGGAGCAACTGTTAAGATTCTACGCATTTTATAAACAAGCAACTGTCGGTCAACTCGACCCACTCGCAAATCCGAAACCATCTTTTTACAAACTAAATGATCGTGCCAAATGGGAAGCATGGAACGCCCTAAAAACCATGGCAAAAGATGAGGCAATGACAGAATATGTTAAGCTCTTAACAGCCTCAAAATCAGATTGGTACGACGAAAGTGCCGCTACAGATAGCAAGTCTAAGCAAGCTTTCGGCGTGAGTGTCTCTCGAATGAAGAGCGACGACAGTGAATTGATAAATGAGGCCGATAAGACCATAGAGGATTTCATTAAAGAGGGAAACGTTTCGCGCGTTGCGAGCCTCCTCGAGTCGTTATCGATCGGAGATATAAACGAAATTGATGACGAGTCGGGACTCGGCATCCTTCACTGGTCCGCAGACAGAGGCAACGATTCCATACTTGAGCTGATCTTGAAGAAGAAAGGAGTGAATGTAGACCTACAAGACGCAGAAGGACAGACTGCACTCCACTATGCCTCTTCGTGCGGCCATAAAAAGTGTATTGAATTGCTTCTCAAACACGGCGCCAGCAAAACAATCGTAGATAACGACGGATGCTCTTGTGTAGATAATGCATTTGATGAAGAAATAAAGAAGATGCTTTAT
Protein: 244 (aa)
MSDEVDNKFNLAANYIQSHHQEFNKEQLLRFYAFYKQATVGQLDPLANPKPSFYKLNDRAKWEAWNALKTMAKDEAMTEYVKLLTASKSDWYDESAATDSKSKQAFGVSVSRMKSDDSELINEADKTIEDFIKEGNVSRVASLLESLSIGDINEIDDESGLGILHWSADRGNDSILELILKKKGVNVDLQDAEGQTALHYASSCGHKKCIELLLKHGASKTIVDNDGCSCVDNAFDEEIKKMLY
| Type | Start | End | Length |
| CDS |
9357 |
10088 |
732 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659120 |
V-1 protein, putative [Aedes aegypti] gb|EAT39927.1| V-1 protein, putative [Aedes aegypti] |
4e-51 |
| InterPro |
IPR020683 |
Ankyrin repeat-containing domain |
|
| InterPro |
IPR000582 |
Acyl-CoA-binding protein, ACBP |
|
| InterPro |
IPR002110 |
Ankyrin repeat |
|
| InterPro |
IPR014352 |
FERM/acyl-CoA-binding protein, 3-helical bundle |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0000062 |
fatty-acyl-CoA binding |
|
| Pfam |
PF12796.2 |
Ankyrin repeats (3 copies) |
2.7e-14 |
| Pfam |
PF13857.1 |
Ankyrin repeats (many copies) |
7e-18 |
| Pfam |
PF08874.5 |
Domain of unknown function (DUF1835) |
0.098 |
| Pfam |
PF07952.7 |
Clostridium neurotoxin, Translocation domain |
0.02 |
| Pfam |
PF00887.14 |
Acyl CoA binding protein |
9.6e-24 |
| Pfam |
PF13637.1 |
Ankyrin repeats (many copies) |
6.2e-13 |
| Pfam |
PF13606.1 |
Ankyrin repeat |
2.2e-09 |
| Pfam |
PF00023.25 |
Ankyrin repeat |
1.1e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_80899 |
| C. quinquefasciatus |
CPIJ008477 |
| A. gambiae |
AGAP000752 |
| A. mellifera |
GB14394-PA |
| H. melpomene |
HMEL014615-PA |
| D. melanogaster |
FBgn0064116 |
| H. sapiens |
ENSP00000356567 |
| P. vanderplanki |
Pv.03237 |
| A. aegypti |
AAEL008309 |
| T. castaneum |
TC002300 |
| M. musculus |
ENSMUSG00000033701 |
| N. vitripennis |
NV13520-PA |