MidgeBase gene description page [Pn.10772]
Outline
| Gene ID | Pn.10772 |
| Type | Protein coding gene |
| Scaffold | PnScaf12143 |
| Start | 18796 |
| End | 20160 |
| Direction | + |
Sequence
Transcript: 1125 (bp)
ATGGATTTCACTTCGAATGATTTTCAAATCACTGACTCACCAACAATTGCTCAGCTCAAGGAGTTGAGAGAGTGCCAGGGGCAATACTATGCGGAACAGAAGCGAATAGAGCGAGAGGAACAGATGTCTTACCGGCAGGACCTTCAAGAGATCCTGCAGCGCTTCAAGTTCAACGAGTGCAAAGGCATAGATACCCAAGTCCACTTTATCAATCCGCACTTCAAAGACATCCTGATGGAGTCGCAGTGGATGTTGGAGGAGCCGAAGGATCTCGACGAGTACTTGCTCATACCGTGCCCGAAAGGAAAAAGAGTGTCAATCACAAGAAGCGAGGACTCAAAGTTGTCTCAGATCTTCTTCAAGGATGGCAGAAAGTTCATGGACCTGAGGCTTAATATTCCGAAAATGTCACAGCTGGACGGAATTTACAGCAAGCGAACCAAAACGGTTTACTTGCTCGACGTCATTTACTACGATGGAACGGACTTCCGGCACTCGGACACTGCCTTCCGGCGCTACTGGCTGCAGAGCAAGTTCCACGAGCACAAGCTCGGCGTCATCGAAGACAACAGCGATGTCAAGTTTAGTTTTCTCGAGAGTATCGAGTTTTCGCAACCGCAGAAGATCATGGAGTGCTTTCAGACGTTTCCGCTGTTTAAGGACGCAGAGACGGATGGCTTTCTGTTCTACCATCGTGATAATCCTTATGTCGCTGGGAAGTCGGAGAAAATCCTCTGGCTGTTTCCCTACATGGTCGACGAGGTCCTAACGATGTTCAGCGTGAACAAGGACTACAGTCTCTCCAAGCCGCAAAACTACACAAACTACATGGACGAGATCGAGAAGTTTAACGAGAAACAGAGGAAGAAGAATAAAATAAAGGCCAGTAATGAGCGCAAGGCAAGATATCAGCCAAAGACGAACTTCTTAGACGTAATCCAGAACGAGATTCAAAAGATTCAAGACTTTGGGCCGCCTTTAAACTTCGACCAGGGCTGGTTTTGTGGCAACAGTCAAAACATGAATTACGGCGGTGGTGGAAGTCGCGGCAGAGGCGGCAGGAGGGGCAACAGAGGCAACGGGATCATACATCAAGGCTTTCAAATGGCGAGACGACGAGCGATG
Protein: 375 (aa)
MDFTSNDFQITDSPTIAQLKELRECQGQYYAEQKRIEREEQMSYRQDLQEILQRFKFNECKGIDTQVHFINPHFKDILMESQWMLEEPKDLDEYLLIPCPKGKRVSITRSEDSKLSQIFFKDGRKFMDLRLNIPKMSQLDGIYSKRTKTVYLLDVIYYDGTDFRHSDTAFRRYWLQSKFHEHKLGVIEDNSDVKFSFLESIEFSQPQKIMECFQTFPLFKDAETDGFLFYHRDNPYVAGKSEKILWLFPYMVDEVLTMFSVNKDYSLSKPQNYTNYMDEIEKFNEKQRKKNKIKASNERKARYQPKTNFLDVIQNEIQKIQDFGPPLNFDQGWFCGNSQNMNYGGGGSRGRGGRRGNRGNGIIHQGFQMARRRAM
| Type | Start | End | Length |
| CDS |
18796 |
19099 |
304 |
| CDS |
19170 |
19592 |
423 |
| CDS |
19760 |
20157 |
398 |
| intron |
19100 |
19169 |
70 |
| intron |
19593 |
19759 |
167 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_001137877 |
CG42303 [Drosophila melanogaster] gb|ACL83233.1| CG42303 [Drosophila melanogaster] |
2e-31 |
| Pfam |
PF07172.6 |
Glycine rich protein family |
0.0022 |
| Pfam |
PF08164.7 |
Apoptosis-antagonizing transcription factor, C-terminal |
0.024 |
| Pfam |
PF01068.16 |
ATP dependent DNA ligase domain |
0.055 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes