MidgeBase gene description page [Pn.10755]
Outline
| Gene ID | Pn.10755 |
| Type | Protein coding gene |
| Scaffold | PnScaf12137 |
| Start | 3826 |
| End | 6316 |
| Direction | - |
Sequence
Transcript: 1785 (bp)
ATGGGCGAGAATGTAGATAGCGATCTTCTATATGAGGATTTCCAGAATGAAGACCAAAAAGAGTTTAACAATGAGAGTTATGGACAAGAGGACGACTTGTATGACGATGTGTTGACATCAGGGTCAAACAACTTGAACAATAGCGAGAATAATACATCAGCCGAACATAATGCAGAGACTGAAACGAACGGGAGTTATCAAGGCAACATGCATAACATCGCGAGACGATTCCAGCTCTACGTTGGCAACTTGACATGGTGGACTACGGATCAGGACATCTCGGACGCTGTCATCGGCACAGGCATTAGCGATTTTCAAGAGGTGAAGTTCTTCGAGAATCGGGCCAACGGGCAGTCGAAGGGCTTTTGTGTCATTACGCTCGGATCGGAATCGAGCATGCGAATCGTCCTCGAGAACTTGCCGAAAAAGGAGCTCAATGGGCAAGCGCCCGTCGTTACTTTGCCTACCAAGCAGGCACTAAATCAGTTCGAGAGTCAGCAAAAGACTCGACCAACACCGCCAGTTCCGCCGAATCAACAGAAACCGGGCATGTCGGGAGGACCGAACATGATGAACCCGAACATGCCGCCTCAAGGAATGCACTCACGCATGATGAACCCAAATCCGATGGGAAGAGGGCCCATGCCCATGCAAAATCCCGGAATGCTCAACCCAGGCATGCAGCAGAGAATGCCTGGAAACGGACCGCCTCCGCCGTTGAATCACGGACCGCAGATGAACAACATGCCGCCTCGCTTCCAAAACAACTGGAACAACGGTCCGATTCGTCCGCCGCCGAACGGAATGCCGGGCAATCGACCGCCAATGATGAATCCGCAGGGCGGTCCTCCAATGCAAATGATGAACCGGCCGCCCATGAACATGGGAGGCGGACGACCTTTCGGTCCGAATCGGCCGATGCATCCTGGCAACTTCAATCAAGGACAGCAGAACATGAATATGCCTCCACGAGGACCGATGCCGATGAACTCAAACCAGGCGCCACCGGCGCCGCACGTCAACCCTGCGTTCTTCAACAACCAGGGCCCCGTTCAAAATCTCGGTCATCCGGGCGCTCCACACTTCAATCAGCAGCCTCGACCGATGTGGCCAGGAAACAATAAAATGCCCGGCTATGAGGGGCAGGCTGGAAGCGGACCGCAGCCTCCAGTGCAGTCGCAGCAGCCGCCAATTAGCGAGGTCGAGTTCGAGGAAATTATGGGCAGAAACAGGACGGTCAGTAGCTCGGCAATTGCCCGAGCCGTTTCGGACGCTGCCGCCGGTGAATATTCGAGCGCAATTGAAACTCTCGCCACAGCCATTTCGTTAATTAAGCAGTCGAAGGTTGCTAACGACGAACGATGTAAGATTTTAATCACATCGCTGCAAGACACATTACAAGGAATCGAAGCGAAGAGCTTCAATCGCAGAGATCGATCGGACCGTTCGAGATCACGCGAGAGACGCCGAAGGAGGGAGAGGTCCAATTCCCGCTCGTACAGACGGTCAAGAAGTCGCGAGCACCGCGATCATCGCGATCGGGGCAGAGACGATCGTTATTATGGTGAAAATTACCATAGCAGTCGTGATACACGCGAACGATCAAGATCAAGAGATCGAGGGAATACAGAGCATTATCGAGGTGGCGATGAAAGCAATAGCCGCAGTCGTCCACGGAAATCTGCCGAGCCATCGGGAGAGAACTCGGAGAACTTCAAGCGCTCATATGACGAGAGAAATCGTGACTCAGACAGATATCGTGAACGTGAAACAAGAAACCGTCAT
Protein: 595 (aa)
MGENVDSDLLYEDFQNEDQKEFNNESYGQEDDLYDDVLTSGSNNLNNSENNTSAEHNAETETNGSYQGNMHNIARRFQLYVGNLTWWTTDQDISDAVIGTGISDFQEVKFFENRANGQSKGFCVITLGSESSMRIVLENLPKKELNGQAPVVTLPTKQALNQFESQQKTRPTPPVPPNQQKPGMSGGPNMMNPNMPPQGMHSRMMNPNPMGRGPMPMQNPGMLNPGMQQRMPGNGPPPPLNHGPQMNNMPPRFQNNWNNGPIRPPPNGMPGNRPPMMNPQGGPPMQMMNRPPMNMGGGRPFGPNRPMHPGNFNQGQQNMNMPPRGPMPMNSNQAPPAPHVNPAFFNNQGPVQNLGHPGAPHFNQQPRPMWPGNNKMPGYEGQAGSGPQPPVQSQQPPISEVEFEEIMGRNRTVSSSAIARAVSDAAAGEYSSAIETLATAISLIKQSKVANDERCKILITSLQDTLQGIEAKSFNRRDRSDRSRSRERRRRRERSNSRSYRRSRSREHRDHRDRGRDDRYYGENYHSSRDTRERSRSRDRGNTEHYRGGDESNSRSRPRKSAEPSGENSENFKRSYDERNRDSDRYRERETRNRH
| Type | Start | End | Length |
| CDS |
3829 |
3958 |
130 |
| CDS |
4112 |
4213 |
102 |
| CDS |
4504 |
5984 |
1481 |
| CDS |
6245 |
6316 |
72 |
| intron |
3959 |
4111 |
153 |
| intron |
4214 |
4503 |
290 |
| intron |
5985 |
6244 |
260 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_313937 |
AGAP005062-PA [Anopheles gambiae str. PEST] gb|EAA09472.4| AGAP005062-PA [Anopheles gambiae str. PEST] |
1e-89 |
| InterPro |
IPR000504 |
RNA recognition motif domain |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00076.17 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
3.5e-09 |
| Pfam |
PF13893.1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
0.028 |
| Pfam |
PF14259.1 |
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
2.7e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL017652-PA |
| T. castaneum |
TC008014 |
| D. melanogaster |
FBgn0035872 |
| B. mori |
BGIBMGA009409-TA |
| D. plexippus |
DPOGS205980PA |
| P. vanderplanki |
Pv.11143 |
| A. gambiae |
AGAP005062 |