MidgeBase gene description page [Pn.10754]
Outline
| Gene ID | Pn.10754 |
| Type | Protein coding gene |
| Scaffold | PnScaf12137 |
| Start | 260 |
| End | 1790 |
| Direction | + |
Sequence
Transcript: 912 (bp)
ATGTTATTAATCAATAGAGATTTCTACCATCATTTAGAGGCTAGAATATTACTGGGTGAGCTGTGCAAAAACCACTCATGTCCGCTGCCGAATGAAGTTCATCAGCTCAACACGTTCCATTCGATGCCCGCAAGTTCGGCCCAACCTATGAACAATGGAAATAAAACTCCCGCAAAAAATCACCAGGACGAGATTGATACCGATCCTGAAGATCTCGAGGATGTCGTCGGCGAAAGCGAGGACTCTGACGCCGAAGAAGATCTACCGCTAGAACTCGACGATGGACGTAGTGCCAGTAAAAAAGATGAGATGGAGGTGGAGCATCTAGCAACGCTGGAGAGACTAAGACAAACGCAGAGACAAGACTACTTAAGGGGCTCTGTATCAGGAAGTGTTCAAGCGACGGACCGATTGATGAAGGAGCTACGTGACATTTATCGTTCAGATTCCTTCAAGCGAAACATTTATTCGATTGAACTGGTAAATGACTCGATATACGAGTGGAACATCCGACTGATGTCAGTTGACCCCGATAGTCCACTTCACAATGATCTTTTAATGCTGAAAGAGAAGGAGGGAAAGGACAGCATCCTATTAAATATCATTTTTAAGGAAACTTATCCCTTTGAACCACCCTTTGTCCGTGTTGTTCATCCCATTATATCAGGTGGATACGTGTTACTCGGCGGTGCAATTTGCATGGAACTATTAACGAAGCAGGGCTGGAGTTCGGCTTATACAGTAGAAGCTCTTATAATGCAAATCTCAGCAACTTTAGTGAAAGGAAAGGCGCGCATACAGTTCGGAGCGACAAAAGGTCAATATAGCTTGGCGCGCGCCCAACAAAGCTTTAAATCTCTGGTCCAGATTCACGAGAAAAATGGCTGGTTCACACCACCAAAGGAAGACGGA
Protein: 304 (aa)
MLLINRDFYHHLEARILLGELCKNHSCPLPNEVHQLNTFHSMPASSAQPMNNGNKTPAKNHQDEIDTDPEDLEDVVGESEDSDAEEDLPLELDDGRSASKKDEMEVEHLATLERLRQTQRQDYLRGSVSGSVQATDRLMKELRDIYRSDSFKRNIYSIELVNDSIYEWNIRLMSVDPDSPLHNDLLMLKEKEGKDSILLNIIFKETYPFEPPFVRVVHPIISGGYVLLGGAICMELLTKQGWSSAYTVEALIMQISATLVKGKARIQFGATKGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDG
| Type | Start | End | Length |
| CDS |
260 |
273 |
14 |
| CDS |
476 |
500 |
25 |
| CDS |
596 |
931 |
336 |
| CDS |
1017 |
1308 |
292 |
| CDS |
1385 |
1533 |
149 |
| CDS |
1605 |
1671 |
67 |
| CDS |
1759 |
1787 |
29 |
| intron |
274 |
475 |
202 |
| intron |
501 |
595 |
95 |
| intron |
932 |
1016 |
85 |
| intron |
1309 |
1384 |
76 |
| intron |
1534 |
1604 |
71 |
| intron |
1672 |
1758 |
87 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_321673 |
AGAP001452-PA [Anopheles gambiae str. PEST] gb|EAA00826.6| AGAP001452-PA [Anopheles gambiae str. PEST] |
1e-130 |
| InterPro |
IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
|
| InterPro |
IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
|
| Gene Ontology(MF) |
GO:0016881 |
acid-amino acid ligase activity |
|
| Pfam |
PF05773.17 |
RWD domain |
0.002 |
| Pfam |
PF03296.8 |
Poxvirus poly(A) polymerase nucleotidyltransferase domain |
0.068 |
| Pfam |
PF00179.21 |
Ubiquitin-conjugating enzyme |
1.3e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000267938 |
| D. plexippus |
DPOGS204808PA |
| H. sapiens |
ENSP00000456324 |
| D. melanogaster |
FBgn0023528 |
| P. vanderplanki |
Pv.11142 |
| N. vitripennis |
NV13515-PA |
| M. musculus |
ENSMUSG00000042572 |
| A. aegypti |
AAEL004121 |
| H. melpomene |
HMEL014395-PA |
| A. mellifera |
GB19656-PA |
| P. humanus |
PHUM244710-PA |
| A. gambiae |
AGAP001452 |
| S. invicta |
SI2.2.0_09054 |
| B. mori |
BGIBMGA001411-TA |
| H. sapiens |
ENSP00000456229 |
| M. musculus |
ENSMUSG00000045291 |
| H. sapiens |
ENSP00000292211 |
| C. quinquefasciatus |
CPIJ009456 |
| H. sapiens |
ENSP00000340187 |
| M. musculus |
ENSMUSG00000032307 |
| T. castaneum |
TC030776 |