MidgeBase gene description page [Pn.10742]
Outline
| Gene ID | Pn.10742 |
| Type | Protein coding gene |
| Scaffold | PnScaf12118 |
| Start | 1600 |
| End | 5090 |
| Direction | + |
Sequence
Transcript: 2142 (bp)
ATGTTTATCGAGAAAGATACAAACATGAACAACTTTTGGATTCAGTGTGTGATTAAGGCGATCTCCTACGCCGGACTCTTCTACGACATCGTCACATTTCCCGTCTACTTTCTCATCCAGAGACCGTGGAACCGACGGGCCCTGTCGCGCCGAATAAAGGCAAAGCCAATAAGCTCCGATGACACGCAAATCACCTACAGAAGCGTCGATCCGCCGCGCGAGATTCACTTGAAGATGGTCCAGGCGAAGATTGACACGCTCGAGAAGATGCTGAAGTACATGAAGGACGCGCACGCCGAGAAAAAGTGTCTCGGCACGCGACAGGTTCTCAGCGAGGAGGACGAGGTGCAGGCTAACGGAAAGGTCTTCAAGAAGTACAAGATGGGCGAGTACACATGGAGAAACTTCACCGAGACGGAGCAGGAGGCGTGCAACTTCGGACAGGGCATCCGCAAGCTGGGCGTGAAACCAAAGGACAACGTCGTCATTTTTTCGGAGACTCGAGCCGAGTGGATGATTGCTGCTCACGGATTGTTCAAGCACAGCTGCACAATTGTGACGATCTACGCCACGCTCGGCGATGAGGGCATCATTCACGGCGTTAACGAGACAGAGGTGTCGGTGATTATCACGTCGCACGAGTTGATGCCGAAATTGCGCGGCGTCTTGGACAAAATTCCAAAGGTCACGACCATCATTTACTTCGAAGACCAGCTTCAAAAGACCGATACTAAAGGCTTTGAGCGCTTGAAGACGGTGTCGTATTCGCAAATAATCGACTTGGGTGTCAAGAACAAAGTTGAAACGGTTCCGCCGTCGACAAACGACACGGCCATCATCATGTACACGTCGGGCAGCACAGGCATTCCGAAAGGCGTTCTGATCTCACATGGCAACTGCATTGCAACACTCAAATGCTTCTGTGACGTCGTCGAAATCCAGCCGACCGACGTCCTGCTCGGCTTCCTGCCTCTGGCGCACGTGTTCGAGCTGCTCGCCGAGAGCGTCTGTTTGTTGACGGGCGTGCCGATCGGCTACTCGAATCCTAACACCCTCATCGACAGCAGCACAAAGATCATGAAGGGAAGTCGCGGCGACGCGGGCATTCTGCGTCCGACATGTATCACAGCAGTTCCACTAATTTTAGATAGAATCTGTAAGGGAATCACTGATAAGATAAACAAGGGAAGTCCGCTGCAGAAGGCGATCTTCAGATACTGCTACGACTACAAGTGCCGATGGCATCGACGTGGCTTCAAGACGCCCATCTTAGACTTCATAATTTTTAAGAAAATCACAAAGCTATTGGGCGGCCGCATGCGTCTCATGATATCGGGCGGAGCCCCGCTTAGTGCTGAGACTCACGAACAAATCCGTACATGCCTCTGCGTCGATGTCACTCAGGGCTATGGATTGACGGAGACAACGGCAGCAGCGTGCGTAATGGAAAAGCACGACATGACCTACGGGCGCACGGGTGCACCATCGTCGATGGTCGACTTGAGGTTGATTAATTGGGAAGAGGGCGGCTATCGTGTTACCAATAAGCCATATCCGCAGGGCGAAATTGTTCTTGGCTCGAAGAGCGTCGCCATGGGTTACTACAAGATGAAGGAGCTGTCCAAAGAGAGCTTCTTCGAGGAGGACGGCAAGCGATGGTTCCGCACCGGAGACATTGGCGAAATTTGGCCAGACGGTGCTCTCAAGATTATCGATCGCAAGAAGGATTTGGTGAAGCTGCAAGCGGGCGAGTACGTGTCGTTGGGCCGTGTCGAGGCCGAGATGAAGACATGCCCGCTGGTGGAGAACATTTGCGTGTATTGCGATCCATCGAAGCACTACTGCGTCGCGCTTGTCGTGCCGGCCGAGAAGATGCTCATGGAGCTGGCCGAGTCCCTGAACATTCACCACCAGGACTTTGAGAAGCTCTGCTCGTCGCCCATCATCGAGAAGGCGGTCGCTCGCGAGCTCATCGAGCACGCGAAGAAGTGCAAGCTGGAGAAGTTTGAAATTCCCGCGGCAATCACGCTGTGCAAGGAGACGTGGACAACGGAGACCGGCATGGTCACGGCCGCCTTCAAAATCAAGCGCAAGGTCATACAGGAACGCTACAAGGAGGAGATCAAGAGAATGTACGCTTCG
Protein: 714 (aa)
MFIEKDTNMNNFWIQCVIKAISYAGLFYDIVTFPVYFLIQRPWNRRALSRRIKAKPISSDDTQITYRSVDPPREIHLKMVQAKIDTLEKMLKYMKDAHAEKKCLGTRQVLSEEDEVQANGKVFKKYKMGEYTWRNFTETEQEACNFGQGIRKLGVKPKDNVVIFSETRAEWMIAAHGLFKHSCTIVTIYATLGDEGIIHGVNETEVSVIITSHELMPKLRGVLDKIPKVTTIIYFEDQLQKTDTKGFERLKTVSYSQIIDLGVKNKVETVPPSTNDTAIIMYTSGSTGIPKGVLISHGNCIATLKCFCDVVEIQPTDVLLGFLPLAHVFELLAESVCLLTGVPIGYSNPNTLIDSSTKIMKGSRGDAGILRPTCITAVPLILDRICKGITDKINKGSPLQKAIFRYCYDYKCRWHRRGFKTPILDFIIFKKITKLLGGRMRLMISGGAPLSAETHEQIRTCLCVDVTQGYGLTETTAAACVMEKHDMTYGRTGAPSSMVDLRLINWEEGGYRVTNKPYPQGEIVLGSKSVAMGYYKMKELSKESFFEEDGKRWFRTGDIGEIWPDGALKIIDRKKDLVKLQAGEYVSLGRVEAEMKTCPLVENICVYCDPSKHYCVALVVPAEKMLMELAESLNIHHQDFEKLCSSPIIEKAVARELIEHAKKCKLEKFEIPAAITLCKETWTTETGMVTAAFKIKRKVIQERYKEEIKRMYAS
| Type | Start | End | Length |
| CDS |
1600 |
1622 |
23 |
| CDS |
1747 |
1882 |
136 |
| CDS |
1997 |
2372 |
376 |
| CDS |
2442 |
2504 |
63 |
| CDS |
2581 |
2784 |
204 |
| CDS |
3034 |
3570 |
537 |
| CDS |
3677 |
3742 |
66 |
| CDS |
4065 |
4373 |
309 |
| CDS |
4660 |
5087 |
428 |
| intron |
1623 |
1746 |
124 |
| intron |
1883 |
1996 |
114 |
| intron |
2373 |
2441 |
69 |
| intron |
2505 |
2580 |
76 |
| intron |
2785 |
3033 |
249 |
| intron |
3571 |
3676 |
106 |
| intron |
3743 |
4064 |
322 |
| intron |
4374 |
4659 |
286 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002005971 |
GI18805 [Drosophila mojavensis] gb|EDW09906.1| GI18805 [Drosophila mojavensis] |
0.0 |
| InterPro |
IPR020845 |
AMP-binding, conserved site |
|
| InterPro |
IPR000873 |
AMP-dependent synthetase/ligase |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00501.23 |
AMP-binding enzyme |
1.7e-105 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV15124-PA |
| S. invicta |
SI2.2.0_10300 |
| C. quinquefasciatus |
CPIJ015739 |
| P. vanderplanki |
Pv.16911 |
| P. humanus |
PHUM509490-PA |
| D. plexippus |
DPOGS210140PA |
| H. sapiens |
ENSP00000262835 |
| P. vanderplanki |
Pv.10488 |
| A. mellifera |
GB16184-PA |
| P. vanderplanki |
Pv.05047 |
| T. castaneum |
TC014440 |
| H. melpomene |
HMEL011608-PA |
| H. sapiens |
ENSP00000339787 |
| B. mori |
BGIBMGA003788-TA |
| C. quinquefasciatus |
CPIJ019378 |
| P. vanderplanki |
Pv.05049 |
| D. melanogaster |
FBgn0263120 |
| A. aegypti |
AAEL010991 |
| M. musculus |
ENSMUSG00000031278 |
| H. sapiens |
ENSP00000375918 |
| H. sapiens |
ENSP00000419171 |
| A. gambiae |
AGAP003623 |
| H. sapiens |
ENSP00000350012 |