MidgeBase gene description page [Pn.10733]
Outline
| Gene ID | Pn.10733 |
| Type | Protein coding gene |
| Scaffold | PnScaf12111 |
| Start | 12432 |
| End | 14005 |
| Direction | - |
Sequence
Transcript: 1512 (bp)
ATGGAAAGCCTGCTCGAAATTCAAAGGAGATGTCACGAAGAGCGAGAACGTCTGCAGAAGCTCATGGTAGATGAGTTCATGGACAAGAAAATATCGGAAAAGGACAAAATTTTCTCGGAACATCGAATAAAAATTTATTTGGATCAATTTGCTGAAACAACGTCGCGGTTAGTGGATTTGTACGAGGACAAAGATGGAGAGAGAAAGGCAGAAATATCAGCACTTTCAGGGCCGAACGAGTTCACAGAATTTTACTCGCGATTGAAGAGCATCAAAGAATTCCATAAAAAACATCCAGACGAGATAAGTGTACCACTTTCGACAGAATTTGAACAAATGGCAAAAGCCTATCAGCAATCGGATGCCATGAGTCTTCTCGTTGAGTTCACGGATGAGGAGGGATTCGGGAAGTATTTGGATCTTCACGAGTCTTATGACCGGTACATCAACTTAAAAGGCATCGAAAAAACTGACTACATTACCTATTTGATGATTTTCGACCATCTCTATGACATCCCAAAGGATCGTAAAAATGCAGAATACAAAAAGTATATTGATGCTCTGTTCGAATACCTTTACAATTTCAATCAGCGAGTGAAGCCTCTTATGGACATCGGTGTGAGTCTGGATCAAACAAAGGCAGACTTTGAGAAACAGTGGTCGAGTGGAATATTTCCAGGCTGGCCAAAAGAAACTGAAAGCGCGTTGGCAAACGTAGGCGCACCACTTGATTTATCTGCATTTACCAGCTGGGAAGAGCTGGCATCTCTGGGTTTGGATCGACTCAAATCTGCTCTCATGGCTCTCGGAATGAAATGTGGAGGTACACTCGAAGAACGAGCACAGCGTCTTTTTAGCACAAAGGGTATGAAGCAAATTGATCAGTCGCTGCTTGCGAAAAAGACTGCACTCGGCAAAAATGCATCAACTGCCGCGAAAGAGCAAGCCCGACAAAAGGAAATCGCCCTCGTTGAAGCGCAAATCTATTATTTGTGTGAATTGGTGAAGGAGCAGCGAGCGGCCACCAAAGAAAACGTTCAACGCAAACAGGCGAGAGGTGCTGGCGAAAGAAATGACAGCGATGTTGAGGCAAGTGACTCAGAATCAGAAGAAGAAGAAGATGACAATGATGACGTCCCATACAATCCGAAAAATTTACCCTTGGGATGGGATGGAAAGCCAATACCTTACTGGCTGTACAAGTTGCATGGTCTCAACATAAGCTACAATTGCGAAATTTGCGGAAACTACACTTACAAAGGTCCGAAGGCATTTCAACGTCACTTCAGTGAGTGGAGGCATGCCCATGGCATGCGATGCTTGGGCATTCCAAACACTGCTCATTTCGCTAATGTGACTCAAATTGAAGATGCGATTCAGCTGTGGGAAAAAATAAAGCAACAAAAGAATCAAGAACGGTGGGTGCCCGAGCAGAATGAAGAGTTTGAGGATTCGTTGGGAAATGTTGTTACAAAGAAGACCTACGAAGATCTCAAAAGACAAGGCTTATTG
Protein: 504 (aa)
MESLLEIQRRCHEERERLQKLMVDEFMDKKISEKDKIFSEHRIKIYLDQFAETTSRLVDLYEDKDGERKAEISALSGPNEFTEFYSRLKSIKEFHKKHPDEISVPLSTEFEQMAKAYQQSDAMSLLVEFTDEEGFGKYLDLHESYDRYINLKGIEKTDYITYLMIFDHLYDIPKDRKNAEYKKYIDALFEYLYNFNQRVKPLMDIGVSLDQTKADFEKQWSSGIFPGWPKETESALANVGAPLDLSAFTSWEELASLGLDRLKSALMALGMKCGGTLEERAQRLFSTKGMKQIDQSLLAKKTALGKNASTAAKEQARQKEIALVEAQIYYLCELVKEQRAATKENVQRKQARGAGERNDSDVEASDSESEEEEDDNDDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEICGNYTYKGPKAFQRHFSEWRHAHGMRCLGIPNTAHFANVTQIEDAIQLWEKIKQQKNQERWVPEQNEEFEDSLGNVVTKKTYEDLKRQGLL
| Type | Start | End | Length |
| CDS |
12435 |
13802 |
1368 |
| CDS |
13862 |
14005 |
144 |
| intron |
13803 |
13861 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001998358 |
GI23921 [Drosophila mojavensis] gb|EDW13819.1| GI23921 [Drosophila mojavensis] |
0.0 |
| InterPro |
IPR021966 |
Splicing factor SF3a60 binding domain |
|
| InterPro |
IPR000690 |
Zinc finger, C2H2-type matrin |
|
| InterPro |
IPR024598 |
Domain of unknown function DUF3449 |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF05314.6 |
Baculovirus occlusion-derived virus envelope protein EC27 |
0.031 |
| Pfam |
PF13297.1 |
Telomere stability C-terminal |
6.6e-26 |
| Pfam |
PF12874.2 |
Zinc-finger of C2H2 type |
0.083 |
| Pfam |
PF12108.3 |
Splicing factor SF3a60 binding domain |
2.1e-14 |
| Pfam |
PF11931.3 |
Domain of unknown function (DUF3449) |
7.7e-75 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM258680-PA |
| P. vanderplanki |
Pv.00232 |
| A. mellifera |
GB11549-PA |
| D. plexippus |
DPOGS207617PA |
| A. aegypti |
AAEL012348 |
| H. sapiens |
ENSP00000362110 |
| M. musculus |
ENSMUSG00000028902 |
| S. invicta |
SI2.2.0_07726 |
| H. melpomene |
HMEL007862-PA |
| C. quinquefasciatus |
CPIJ002728 |
| T. castaneum |
TC001034 |
| A. aegypti |
AAEL015244 |
| B. mori |
BGIBMGA006358-TA |
| A. gambiae |
AGAP003085 |
| D. melanogaster |
FBgn0014366 |
| N. vitripennis |
NV13330-PA |
| H. sapiens |
ENSP00000392027 |