MidgeBase gene description page [Pn.10723]
Outline
| Gene ID | Pn.10723 |
| Type | Protein coding gene |
| Scaffold | PnScaf12109 |
| Start | 23342 |
| End | 24951 |
| Direction | + |
Sequence
Transcript: 1500 (bp)
ATGGATTTTAGTGTTTTACTTTTAATTTGTATCATATACGGAATAGTAATGTTCATAGACTTTTTCTTCAAAAGCTGTATGATGCTGCCATATTTAGATTTTTTGCGAAATTCAGGACTGAGTGTAGGATTTTTCTCCTTAAAAATACACACAAATGCATTCAACAGATTCATAACGAGACACAGCTCTAAGCTACCGCAAATATACAAAAGCTCATTTAAGCTCGGTTTCTATGTCACGATGGGAGTTTTGTTTCCCATATCTCTTTGTCTGATCGCGATGTCTCTCTTTGCCGAGCAGCCCTCATCTCCGTCATCGTCCTCTTCATCAACGGCGATACATTCAATGAGTCAGCCTAAATCAGATGAAGTTGCTCACTTGGAAATTCTTCTGCCCGGAGTCAACTTGCCCCTCGACCAAATCGGCTACTACCTGCTGTCGCTGCTCATTTGCAGCGTAGTTCATGAGGCTGGTCACGGTATTGCGTCAGTTTTAGAGGACATTCCGGTGTCTGGTTTTGGGATGAAAATAGTGTTTATTCTGCCCATTGCCTACACGCAAATCGACACGGAGCATTTGCAAAGTGCCCGTGCGTGGAAGAAGTTGAAGATTCTATCGGCGGGAATTTGGAATAACGTTCTACTCGCATCCTCGTGCTATGCTCTCCTACTTGCGCTGCCTGTGATTTTCATGCCAGTTTTTAGCAGCAAGGAAGCGGTCTTCATTACCAAAATCAAGCAAAATGCGCCGATCAAAGGAGAGAACGGTCTGTATGTCGGTGATTCAGTCTATCAAATCAACGGCTGCAGTGTCACCAACGAGGACGAGTGGGAGGAGTGTTTGACCGAATCTCTTTTGCACCATCCCGCATACTGTGTGAATGAAGAATTTGTGCATGAGAATGATGAATCAATACAGGAGATCGATCACAAAGACGGAAACATCAATTGCTGCAGCAAATCGAATCCCGCAGTAAATTGCTTTGAGAGCTTCGACGAAGAAAGGCTGCCACAGTACGTGTGTCTAAACATCCGCAAGACGATCGAGCACGCCAAGAACTATTGTCACAAGACGACGACGTGTCCGGAACATGTATCGTGCGTGAAACCTCTAATGGCAAACACAACTACCATCATTCACATAAAGAGGAAGAACAGATTGAAGGATTTCGTGTATTATGGACACCCTATTTTGGACATCCTTTACACGGTGGACGTTTCGAGGTTCATTCCAAAGACAAAAGTCTTAAGCCCTGCATTCGCAGATTCAATTGCACTTTTGCTCAAGTACTTGATAGTTTTTTCATCGGGACTCGCGCTGGTGAATGTTATTCCGTGCTATGGCCTCGACGGCTACCTAATTGTCAACACCATAATCTCGAATTTACCGTCACGATATTTTAGCAAAATGAAGAAGGAAATCATCTCCATATGCATAAATTTAATTGGAACAATAACTTTATTCGTGCTAATCCTCAAGATACTTTGGATGACATTTTTG
Protein: 500 (aa)
MDFSVLLLICIIYGIVMFIDFFFKSCMMLPYLDFLRNSGLSVGFFSLKIHTNAFNRFITRHSSKLPQIYKSSFKLGFYVTMGVLFPISLCLIAMSLFAEQPSSPSSSSSSTAIHSMSQPKSDEVAHLEILLPGVNLPLDQIGYYLLSLLICSVVHEAGHGIASVLEDIPVSGFGMKIVFILPIAYTQIDTEHLQSARAWKKLKILSAGIWNNVLLASSCYALLLALPVIFMPVFSSKEAVFITKIKQNAPIKGENGLYVGDSVYQINGCSVTNEDEWEECLTESLLHHPAYCVNEEFVHENDESIQEIDHKDGNINCCSKSNPAVNCFESFDEERLPQYVCLNIRKTIEHAKNYCHKTTTCPEHVSCVKPLMANTTTIIHIKRKNRLKDFVYYGHPILDILYTVDVSRFIPKTKVLSPAFADSIALLLKYLIVFSSGLALVNVIPCYGLDGYLIVNTIISNLPSRYFSKMKKEIISICINLIGTITLFVLILKILWMTFL
| Type | Start | End | Length |
| CDS |
23342 |
23813 |
472 |
| CDS |
23921 |
24948 |
1028 |
| intron |
23814 |
23920 |
107 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001870882 |
protease m50 membrane-bound transcription factor site 2 protease [Culex quinquefasciatus] gb|EDS34400.1| protease m50 membrane-bound transcription factor site 2 protease [Culex quinquefasciatus] |
1e-128 |
| InterPro |
IPR008915 |
Peptidase M50 |
|
| InterPro |
IPR001193 |
Peptidase M50, mammalian sterol-regulatory element binding protein |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0004222 |
metalloendopeptidase activity |
|
| Pfam |
PF02163.17 |
Peptidase family M50 |
1.8e-24 |
| Pfam |
PF13180.1 |
PDZ domain |
0.0085 |
| Pfam |
PF00595.19 |
PDZ domain (Also known as DHR or GLGF) |
0.01 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000368798 |
| A. aegypti |
AAEL013482 |
| M. musculus |
ENSMUSG00000046873 |
| H. melpomene |
HMEL017837-PA |
| N. vitripennis |
NV13684-PA |
| C. quinquefasciatus |
CPIJ010386 |
| A. aegypti |
AAEL012324 |
| D. melanogaster |
FBgn0033656 |
| H. sapiens |
ENSP00000368796 |
| P. vanderplanki |
Pv.13889 |
| S. invicta |
SI2.2.0_05718 |
| D. plexippus |
DPOGS214515PA |
| P. humanus |
PHUM599380-PA |
| A. gambiae |
AGAP011819 |
| T. castaneum |
TC000469 |
| A. mellifera |
GB13283-PA |