MidgeBase gene description page [Pn.10722]
Outline
| Gene ID | Pn.10722 |
| Type | Protein coding gene |
| Scaffold | PnScaf12109 |
| Start | 22025 |
| End | 23072 |
| Direction | + |
Sequence
Transcript: 639 (bp)
ATGGGCTTTGGCGGACGAGGAGGCTTTGGACGCGGAGGCGGCGGTGGCTCGAAGTTTGGTAATCGGGGCGGAGGACGAGGAGGATTTGGCAATAAGGGAAAATTCGAACAAGGACCGCCTGCTAGAGTCATTCCATTCGGATATTTTGACTACACATGCCAGGACGACTTGGTGTTAAAATCAGAAATTGAAGACGTTCCCTATTTCAACGCTCCAATATTTCTCGAAAACAAATCACAAATCGGAAAGATTGATGAAATCTTTGGCACTCTGCGTGATTATTCGGTATCTGTAAAACTGGGCGAAAATATGAAGGCATCGAGTTTTGTGCCCAAACAAAAACTCTTCATTGATCCTGCCAAGCTTTTACCATTGCAACGATTCCTTCCTCAGCCGCCAAAGCCGAAAGGAATTGGCAAAAAGAAAAAAGGGGATAAACCGTCGGGTGAGGGCGGTGGCAGAGGAGGAAGAGGTGGAGGTTTCGGAAATCGCGGTGGATTCTCAGGACGAGGTGGAAGTCGAGGCGGCGCAGGAGGAAGAGGTGGTGGAGGCGGAAGAGGCGGTGGTGGTGGATTCAGTCGTGGACGAGGTGGTGGTGGTGGTGGTTTCAGCCGAGGAGGCGGAGGAGGAAAGAGGTGG
Protein: 213 (aa)
MGFGGRGGFGRGGGGGSKFGNRGGGRGGFGNKGKFEQGPPARVIPFGYFDYTCQDDLVLKSEIEDVPYFNAPIFLENKSQIGKIDEIFGTLRDYSVSVKLGENMKASSFVPKQKLFIDPAKLLPLQRFLPQPPKPKGIGKKKKGDKPSGEGGGRGGRGGGFGNRGGFSGRGGSRGGAGGRGGGGGRGGGGGFSRGRGGGGGGFSRGGGGGKRW
| Type | Start | End | Length |
| CDS |
22025 |
22061 |
37 |
| CDS |
22128 |
22148 |
21 |
| CDS |
22231 |
22311 |
81 |
| CDS |
22373 |
22750 |
378 |
| CDS |
22815 |
22874 |
60 |
| CDS |
22939 |
22971 |
33 |
| CDS |
23041 |
23069 |
29 |
| intron |
22062 |
22127 |
66 |
| intron |
22149 |
22230 |
82 |
| intron |
22312 |
22372 |
61 |
| intron |
22751 |
22814 |
64 |
| intron |
22875 |
22938 |
64 |
| intron |
22972 |
23040 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002027029 |
GL18155 [Drosophila persimilis] ref|XP_002135667.1| GA27857 [Drosophila pseudoobscura pseudoobscura] gb|EDW34850.1| GL18155 [Drosophila persimilis] gb|EDY70844.1| GA27857 [Drosophila pseudoobscura pseudoobscura] |
3e-41 |
| InterPro |
IPR021154 |
H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote |
|
| InterPro |
IPR007504 |
H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 |
|
| InterPro |
IPR009000 |
Translation elongation/initiation factor/Ribosomal, beta-barrel |
|
| Gene Ontology(BP) |
GO:0031120 |
snRNA pseudouridine synthesis |
|
| Gene Ontology(BP) |
GO:0042254 |
ribosome biogenesis |
|
| Gene Ontology(CC) |
GO:0031429 |
box H/ACA snoRNP complex |
|
| Gene Ontology(MF) |
GO:0030515 |
snoRNA binding |
|
| Gene Ontology(MF) |
GO:0009982 |
pseudouridine synthase activity |
|
| Pfam |
PF04410.9 |
Gar1/Naf1 RNA binding region |
4.4e-35 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000378127 |
| T. castaneum |
TC002940 |
| H. sapiens |
ENSP00000226796 |
| A. aegypti |
AAEL017113 |
| P. vanderplanki |
Pv.03449 |
| H. melpomene |
HMEL013093-PA |
| B. mori |
BGIBMGA006056-TA |
| A. gambiae |
AGAP001529 |
| N. vitripennis |
NV15791-PA |
| D. plexippus |
DPOGS201879PA |
| P. humanus |
PHUM424750-PA |
| M. musculus |
ENSMUSG00000028010 |
| D. melanogaster |
FBgn0011824 |
| A. mellifera |
GB19124-PA |