MidgeBase gene description page [Pn.10720]
Outline
| Gene ID | Pn.10720 |
| Type | Protein coding gene |
| Scaffold | PnScaf12109 |
| Start | 15064 |
| End | 16869 |
| Direction | + |
Sequence
Transcript: 1347 (bp)
ATGTCAGAAGCAATTGATTTATCAAACGACGGTGGAGTTTTGAAGGAGATTTTAAAAGAAGGAGAAGGAGAGGAGAAACCCTGTGATGGCTGTATCGTATCGTGTCATTATACTGGGACACTGCTGGACGGAACAAAGTTCGATTCGTCGCTGGATCGTAATGAGCCCTTTGAATTTACTTTGGGAAAGGGAGAAGTAATTCGTTCATGGGACATTGGTGTTGCTTCCATGAGGAGAGGCGAGAAATGTGTCCTCACTTGTGCTCCAAATTACGCATATGGAGCCGCTGGATCTCCTCCAAACATTCCTCCCAACAGTACCCTTCGATTCGAACTCGAGCTGCTCGGCTGGAAGGGCCAAGATCTTTCTAAGAACGGCGACAACGGGATTGAGCGCTTTATTGTCACGAAGAGCGACAAAAAGAAGACGCCGAACGATGGTGCTCGCTGTAAGGTCTCGCTTCGAGGAAATTTCGAGGGCCGCGTTTTTGACGAGCGAGAGGTGGAGTTTAATATCGGCGAAGGAGAAGACTTCGATATTATTAGCGGCATAGAAACGGCTCTCGAAAAGATGTCTCAAGGAGAAACCAGCCGCTTAATAATTAAACCAAAGTATGCATTCGGTGCAGAGGGCAATGAGAAATTTATGATTCCGTCGAATGCGACCGTCGAGTACTTAGTTACGCTGCATGAATTCGAAAAAGAGGTCGAAGCATGGAAACTCGATGCCGACGAAAGTGTAAAGCAGGCTAAAGTATTCAAGGATAAAGCTACAGGTTACTTTAAGCAAGACAAATATCGAATGGCTCTCAAATTCTACGAAAAGTCTGCTTCGTTTCTGTCTAATTGTGACACCTCGGTCGATGGTGAAAGCAAAACAATTTCCATCTCTCTGTACTTGAACAAAGCCCTGTGTTATCAAAAGCTCAATGATCAAGACGAAGTGAGACACGCGTGCAATGAGGCACTTACGATGTATGGCAACAACGTCAAGGCCCTGTATCGTCGCGGTCAAGCGAACTTATCACTCGGCGAAATCGAGAAGGCTCTGGCCGATTTTGAAAGGGTTCATCAGATAGAACCGGAGAATAAGGCCGCGCAAAATCAGATTGCCATTTGCAAGCAGAAGATAAAGGCCTACAAAGACGAAGAGAAAAAGAGATATAAGAACATGTTCTCTTATGGACCAGCTGATGGGCCGAAAGAGGAGATCCCGCAGATGGATCCATTCGCCAAATTCGGAGAGTGGAAGGAAGAAGAAAGATCTCACCCACCATCTAAGTTCGAAGAGGAAAATCCAGATTTAATTATGTGTGATAATTCCGTCACCGAAAAACTCAAGAACATG
Protein: 449 (aa)
MSEAIDLSNDGGVLKEILKEGEGEEKPCDGCIVSCHYTGTLLDGTKFDSSLDRNEPFEFTLGKGEVIRSWDIGVASMRRGEKCVLTCAPNYAYGAAGSPPNIPPNSTLRFELELLGWKGQDLSKNGDNGIERFIVTKSDKKKTPNDGARCKVSLRGNFEGRVFDEREVEFNIGEGEDFDIISGIETALEKMSQGETSRLIIKPKYAFGAEGNEKFMIPSNATVEYLVTLHEFEKEVEAWKLDADESVKQAKVFKDKATGYFKQDKYRMALKFYEKSASFLSNCDTSVDGESKTISISLYLNKALCYQKLNDQDEVRHACNEALTMYGNNVKALYRRGQANLSLGEIEKALADFERVHQIEPENKAAQNQIAICKQKIKAYKDEEKKRYKNMFSYGPADGPKEEIPQMDPFAKFGEWKEEERSHPPSKFEEENPDLIMCDNSVTEKLKNM
| Type | Start | End | Length |
| CDS |
15064 |
15120 |
57 |
| CDS |
15320 |
16112 |
793 |
| CDS |
16196 |
16545 |
350 |
| CDS |
16646 |
16707 |
62 |
| CDS |
16782 |
16866 |
85 |
| intron |
15121 |
15319 |
199 |
| intron |
16113 |
16195 |
83 |
| intron |
16546 |
16645 |
100 |
| intron |
16708 |
16781 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865043 |
FK506-binding protein 59 [Culex quinquefasciatus] gb|EDS41102.1| FK506-binding protein 59 [Culex quinquefasciatus] |
1e-155 |
| InterPro |
IPR001440 |
Tetratricopeptide TPR-1 |
|
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| InterPro |
IPR023114 |
Elongated TPR repeat-containing domain |
|
| InterPro |
IPR013026 |
Tetratricopeptide repeat-containing domain |
|
| InterPro |
IPR019734 |
Tetratricopeptide repeat |
|
| InterPro |
IPR023566 |
Peptidyl-prolyl cis-trans isomerase, FKBP-type |
|
| InterPro |
IPR001179 |
Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain |
|
| Gene Ontology(BP) |
GO:0006457 |
protein folding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF07719.12 |
Tetratricopeptide repeat |
5.1e-13 |
| Pfam |
PF13174.1 |
Tetratricopeptide repeat |
0.00079 |
| Pfam |
PF03114.13 |
BAR domain |
0.0046 |
| Pfam |
PF13176.1 |
Tetratricopeptide repeat |
0.04 |
| Pfam |
PF12895.2 |
Anaphase-promoting complex, cyclosome, subunit 3 |
0.0031 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
0.0013 |
| Pfam |
PF13424.1 |
Tetratricopeptide repeat |
2.4e-07 |
| Pfam |
PF13432.1 |
Tetratricopeptide repeat |
0.0066 |
| Pfam |
PF00515.23 |
Tetratricopeptide repeat |
2e-17 |
| Pfam |
PF13414.1 |
TPR repeat |
2.6e-16 |
| Pfam |
PF13371.1 |
Tetratricopeptide repeat |
0.0035 |
| Pfam |
PF13431.1 |
Tetratricopeptide repeat |
0.00055 |
| Pfam |
PF13181.1 |
Tetratricopeptide repeat |
4.2e-07 |
| Pfam |
PF00254.23 |
FKBP-type peptidyl-prolyl cis-trans isomerase |
9.3e-47 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000441205 |
| H. sapiens |
ENSP00000001008 |
| N. vitripennis |
NV50142-PA |
| C. quinquefasciatus |
CPIJ014691 |
| P. vanderplanki |
Pv.03451 |
| H. sapiens |
ENSP00000338160 |
| B. mori |
BGIBMGA013635-TA |
| A. gambiae |
AGAP009347 |
| D. melanogaster |
FBgn0029174 |
| H. sapiens |
ENSP00000444810 |
| H. sapiens |
ENSP00000445412 |
| A. aegypti |
AAEL010491 |
| H. melpomene |
HMEL007164-PA |
| H. sapiens |
ENSP00000349811 |
| P. humanus |
PHUM544510-PA |
| M. musculus |
ENSMUSG00000024222 |
| A. mellifera |
GB13770-PA |
| T. castaneum |
TC008405 |
| S. invicta |
SI2.2.0_08536 |
| D. plexippus |
DPOGS210582PA |