MidgeBase gene description page [Pn.10704]
Outline
| Gene ID | Pn.10704 |
| Type | Protein coding gene |
| Scaffold | PnScaf12085 |
| Start | 349 |
| End | 1089 |
| Direction | - |
Sequence
Transcript: 738 (bp)
ATGGAAAAATGGCGCGGAAAAGTGGCGGTCGTGACGGGAGCGTCGTCGGGCATCGGCGAGGCGATTGTCAAGGACTTTGCAGCGCACGGGCTCGTCGTCGTCGGGCTCGCACGGAGAGTGGAGAAAATCCCGACTCTGGACGGCAAAGTGACGGCCATCAAGTGCGACGTCGCCGACTTGAGCTCGATCCGAGCGGCGTTCGCCGAAATCGAGCGAAGATTCGGGAAAGTTCACGTCCTGGTGAACAACGCGGGCGTCTCGCTGTACGTGAATGTCCTCGAGAACTCGGACGAAGTCACGCGGAGAGTCGACGAGGTCATTGACATCAACCTCAAAGGCTTGGTGCACTGCACGCGCGCGGCAGTCGGGCTGATGCGGGCGAGCGGCGAGCACGGCGTGGTCGTCAACATCGGCTCGATCATGGACTCGGTCATTGCCTTTCCGAACCCGTCGAGTCTCTATCCCGCCACCAAGCACGCCGTGCGCGCCTTCACCGAAATCGTGCGCCAGGAGCTGATCGCCAGCGGCTGCGAGCGGCTGAAGGTCTGCAACATCAGCCCGGGCATCGTGAGGACCAACATCGGGCAGGCGTGCGGCAGGAAAAATGCCGACTCGCACTACGACCACGTGCCGCACATCGCGTCCGAAGACATTGCGGCGGGCGTTCTTTACGTGCTCAGCACGCCGCACAACGTCAACGTCACGCAGGTCACCATCCGGCCCGTCGGCGAACGGTTT
Protein: 246 (aa)
MEKWRGKVAVVTGASSGIGEAIVKDFAAHGLVVVGLARRVEKIPTLDGKVTAIKCDVADLSSIRAAFAEIERRFGKVHVLVNNAGVSLYVNVLENSDEVTRRVDEVIDINLKGLVHCTRAAVGLMRASGEHGVVVNIGSIMDSVIAFPNPSSLYPATKHAVRAFTEIVRQELIASGCERLKVCNISPGIVRTNIGQACGRKNADSHYDHVPHIASEDIAAGVLYVLSTPHNVNVTQVTIRPVGERF
| Type | Start | End | Length |
| CDS |
352 |
1089 |
738 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_556135 |
AGAP005501-PA [Anopheles gambiae str. PEST] gb|EAL39843.3| AGAP005501-PA [Anopheles gambiae str. PEST] |
4e-46 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
0.17 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
3.6e-07 |
| Pfam |
PF04321.12 |
RmlD substrate binding domain |
0.05 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
9.5e-10 |
| Pfam |
PF09485.5 |
CRISPR-associated protein Cse2 (CRISPR_cse2) |
0.043 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
5.6e-25 |
| Pfam |
PF12242.3 |
NAD(P)H binding domain of trans-2-enoyl-CoA reductase |
0.023 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
3.1e-07 |
| Pfam |
PF08659.5 |
KR domain |
1.5e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06965 |