MidgeBase gene description page [Pn.10683]
Outline
| Gene ID | Pn.10683 |
| Type | Protein coding gene |
| Scaffold | PnScaf12022 |
| Start | 1490 |
| End | 3014 |
| Direction | + |
Sequence
Transcript: 729 (bp)
ATGAGCTGCTTGTCTTGCGCTTATGGAATCCACAATGGCCACGTGGTGCAGCCAAACAGCGTTCCATACCAAGTCCTGCTACTCGTCAAAAAAGGAGACAAAACATCGAAATGTGGAGGATCACTGGTGAAGGCAGATCGCGTTCTCACTGCAGCCCATTGTCTCAAGGACCACGACTCGGCTGAGGTCATAGTCGGTGCCCACCGACTCCACGACAGACGCGAAAGCACAAGGCAGTCGCAGACGGTTGACTCGACTGCCCTCTTTCCGCACCCTACGTGGGCGCCTGGAAAGGGCCACGATGTGGGCATCATCAAGCTGCCGGAACCTTTTGAACTCAACGAGGAAGTCAGTCTGATTAAACTGCCGTACGGTCTCGAGGACGAAACGTTTGACGGCGAAACAGCAAAAATCGCTGGATGGGGCGAAATCGACGATAATCCGAGAGATCACGTTGGACCGTTGCGCGCGGTCGAGAACCCAATCATTTCGAATCACGAGTGCCGCAAACACCACGTCAAAATAGACAGTGGAAACCTCTGTTTATCGGGCAAGGGAGGACGTCGCACGTGCAACGGCGATTCGGGCGGACCGTTAGTGGTTCGCTTCAACGGGGAGTTGACACAAGTTGGCCTCACGAGCAAGGGCGAGGGAGATTGCGATGCGGTGGCACCGAGCATTTTTACACGTGTCACCTCATACCTTGACAGCTTCATCGATAAGCACTTG
Protein: 243 (aa)
MSCLSCAYGIHNGHVVQPNSVPYQVLLLVKKGDKTSKCGGSLVKADRVLTAAHCLKDHDSAEVIVGAHRLHDRRESTRQSQTVDSTALFPHPTWAPGKGHDVGIIKLPEPFELNEEVSLIKLPYGLEDETFDGETAKIAGWGEIDDNPRDHVGPLRAVENPIISNHECRKHHVKIDSGNLCLSGKGGRRTCNGDSGGPLVVRFNGELTQVGLTSKGEGDCDAVAPSIFTRVTSYLDSFIDKHL
| Type | Start | End | Length |
| CDS |
1490 |
1499 |
10 |
| CDS |
2229 |
2651 |
423 |
| CDS |
2716 |
3011 |
296 |
| intron |
1500 |
2228 |
729 |
| intron |
2652 |
2715 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002061963 |
GK17275 [Drosophila willistoni] gb|EDW72949.1| GK17275 [Drosophila willistoni] |
5e-35 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF13365.1 |
Trypsin-like peptidase domain |
0.001 |
| Pfam |
PF00089.21 |
Trypsin |
4.3e-47 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06636 |