MidgeBase gene description page [Pn.10620]
Outline
| Gene ID | Pn.10620 |
| Type | Protein coding gene |
| Scaffold | PnScaf11936 |
| Start | 26198 |
| End | 27746 |
| Direction | - |
Sequence
Transcript: 1236 (bp)
ATGAGTCGCAGCGGCGTTTCCCTGAAGATGGACAGCTTCGGCAGTGTCGAGGATCCGATCTCGAAGAGCCTCGAGGAGATTACGCGCTTCACTTGGCAGAACGAGAACGGAATGGTGGTGCAATTGATAAGTTACGGAGCGATAATTACGTCCATAAAAGTGCCGGATCGCGAGGGAAAACTGGCGGACGTCGTGCTCGGCTTCGACGACATCGCCGGCTACCGGAAGAGCAACAATCCGTACTTTGGCGCGCTGGTCGGTCGCGTCGCCAACAGAATTGCGCGTGGCGAGTTCATCCTCAACGGCGAGATCGTGAACGTCGCCAAGAACTGGAACAACAAGCACTCGCTGCACGGCGGCGTCGTCGGCTTCGACAAGTTCAATTTCCATCATTTCGTCGACGGCAACGTCGTCTACTTGACGAACCTTTCGCCGGACGAATTCGAGGGCTATCCGGGCGCTGTTCTCACCACGGTCAAGTGCGAATTGCTCAGCGACAATTCTCTCACGCTGGAGTTCACAGCCACCACGACCAAGCCGACCGCAATCAATCTCACCAACCACTCTTACTTCAATCTCGCCGGCCATGAGACTGGATATGAGGAAATTTACAAGCACCTCATTTCAATAAACGCCGATAAGATAACCGAGACTGACGGCGAGTCGATTCCGACTGGAAATTTCATCGCCGTCGGTGGCACTGCCTTTGACTTGAGGACGCCGCGCGAACTTGGCCCGGCCATGAAGAATCTCACCGGTCCCGGCTACGACGATAACTTCTGCGTGAATGTGCCGAAGAGCGGCGGAGAAGCGGAACAGCCGGTGGTTTTCGTGTCGAGAGCCGTTCATCCGACGAGTGGTCGGTTCATGGAGGTGTTTAGCAACCAGCCAGGCGTTCAGCTGTACACCTCGAACTTCCTGCCCGATCCGTGCGGAAACATAAGCCCATCGCTCGCCAAAGGTGAGAATTACTACGAAGTTGATGGCGTGTTGACCACGAAACTGGAGCAAGTAGATGTGGCGACGAAAGAGGAGCAGAAGTCCGAGTGCAAAGCGACTGACGACGCAAATGCCATCATCGGCAAAGGAGGCGTTCACTACTTCAAGCACGGGGCTTTCTGTTTCGAGACCCAAAAGTTCCCCGACGCTGTTCACCATGACAACTTCCCGTCAGTCATTTTGAATCCGGGAAAGACTTACAGACACGAGGTCGTCTACAAGTTTGGCGTTGAGGCT
Protein: 412 (aa)
MSRSGVSLKMDSFGSVEDPISKSLEEITRFTWQNENGMVVQLISYGAIITSIKVPDREGKLADVVLGFDDIAGYRKSNNPYFGALVGRVANRIARGEFILNGEIVNVAKNWNNKHSLHGGVVGFDKFNFHHFVDGNVVYLTNLSPDEFEGYPGAVLTTVKCELLSDNSLTLEFTATTTKPTAINLTNHSYFNLAGHETGYEEIYKHLISINADKITETDGESIPTGNFIAVGGTAFDLRTPRELGPAMKNLTGPGYDDNFCVNVPKSGGEAEQPVVFVSRAVHPTSGRFMEVFSNQPGVQLYTSNFLPDPCGNISPSLAKGENYYEVDGVLTTKLEQVDVATKEEQKSECKATDDANAIIGKGGVHYFKHGAFCFETQKFPDAVHHDNFPSVILNPGKTYRHEVVYKFGVEA
| Type | Start | End | Length |
| CDS |
26201 |
26278 |
78 |
| CDS |
26339 |
26557 |
219 |
| CDS |
26644 |
26743 |
100 |
| CDS |
26811 |
27061 |
251 |
| CDS |
27159 |
27746 |
588 |
| intron |
26279 |
26338 |
60 |
| intron |
26558 |
26643 |
86 |
| intron |
26744 |
26810 |
67 |
| intron |
27062 |
27158 |
97 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843195 |
aldose 1-epimerase [Culex quinquefasciatus] gb|EDS31254.1| aldose 1-epimerase [Culex quinquefasciatus] |
1e-134 |
| InterPro |
IPR008183 |
Aldose 1-/Glucose-6-phosphate 1-epimerase |
|
| InterPro |
IPR011013 |
Glycoside hydrolase-type carbohydrate-binding |
|
| InterPro |
IPR015443 |
Aldose 1-epimerase |
|
| InterPro |
IPR014718 |
Glycoside hydrolase-type carbohydrate-binding, subgroup |
|
| InterPro |
IPR018052 |
Aldose 1-epimerase, conserved site |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(BP) |
GO:0019318 |
hexose metabolic process |
|
| Gene Ontology(MF) |
GO:0030246 |
carbohydrate binding |
|
| Gene Ontology(MF) |
GO:0016853 |
isomerase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF01263.15 |
Aldose 1-epimerase |
3.6e-83 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000410598 |
| P. humanus |
PHUM366120-PA |
| P. vanderplanki |
Pv.13151 |
| H. melpomene |
HMEL008454-PA |
| B. mori |
BGIBMGA009232-TA |
| N. vitripennis |
NV17196-PA |
| M. musculus |
ENSMUSG00000035473 |
| D. melanogaster |
FBgn0035679 |
| H. sapiens |
ENSP00000409083 |
| H. sapiens |
ENSP00000399473 |
| A. gambiae |
AGAP004376 |
| D. plexippus |
DPOGS213742PA |
| A. mellifera |
GB12384-PA |
| A. aegypti |
AAEL010590 |
| T. castaneum |
TC001766 |
| P. vanderplanki |
Pv.09323 |
| S. invicta |
SI2.2.0_09471 |
| T. castaneum |
TC010337 |
| C. quinquefasciatus |
CPIJ001655 |
| H. sapiens |
ENSP00000272252 |