MidgeBase gene description page [Pn.10597]
Outline
| Gene ID | Pn.10597 |
| Type | Protein coding gene |
| Scaffold | PnScaf11907 |
| Start | 525 |
| End | 28179 |
| Direction | - |
Sequence
Transcript: 1278 (bp)
ATGTGCGAGGGTTTTATTGAGATTTTCATTAGACAACACATGAACAATGGCGCTGAAGATGTTCTCAAATTTCAAGGAAATGACTCAACAATTGATCATTTCCGACTGATATTACGAGTTGGTGATAGTTTATTAGTCGGAGGAAGAAACGTTATCTATAATCTAAGTATCTATGATTTATCAGAGCACAACCGAGTGCTCTGGAATTCGGCAGAGGATGACATGAAGATGTGCATGGTGAAGGGAAAGGACGAGGAGTCATGTCAGAATTATATTCGCATTTTAACAATCACAACACCGGGAATTCTGTTGGCATGCGGAACAAATTCCTATCGGCCACTCTGTCACTTCTACAACATCACCGGTAGTAAATATAACATCGAGAAAGTAAAACCTGGTCAGGCGATTTGTCCTTACGGACCTATGCATAACTCAACATCAGTATTTGTTGATAGTGATCTGTACACGGGAACGGTTGCCGATTTTAGTGGCAACGACCCAATCATTTATCGCGAGCCACTCCAGACCGACCAGTTCGATAGTCTTAGTCTTAACGCACCCAATTTCGTCGGATCATTTTCATTCGGCGATTTCGTGTACTTCTTCTTCCGAGAAACAGCTGTTGAGTTCATCAACTGCGGCAAGTCTGTGTACAGTCGCGTTGCGCGCGTATGTAAATGGGACAAGGGCGGTCCCCATCGCTTCCGCAATCGCTGGACGACATTCCTCAAATCACGCCTCAACTGCTCCATTCCCGGAGACTTTCCCTTCTACTTCGACGAGATCCAGTCAAACAGCGATCTCGTGGAGGGAATTTACGGAAACACCAATGCTCGTTTAATTTATGGCGTGTTTACTACGTCGCACAACGCCATCGCTGGATCAGCCATCTGTGCATTTTCTCTGCAGGAAATTTCGGATACATTTGAGGGCAATTTTAAGGAACAGCCGAACATTCATTCGACTTGGAAGCCAGTCGAGAAGTCAAAGATTCCCGACCCGAGACCTGGAGTCTGCCACAATGACACGCGAAATCTGCCCGAGGGGACGCTCACGTTCATTAAAACTCACTCGCTGATGGACGAGAACGTTTCCGCATACTTTGGACTTCCAATTTTAACGCGCGTCGGCACACCATACCGCTTCACACAAATTGCCGTTGATCCGCAAATAAAAACGCCCGGAGGCCGAACGTATGATGTGATATTCGTTGGCACAGGTAGGTTCAGCGAGAGAAACAACAAAAAAAATCAACAAAAAAAAATCATGGCACTTCTC
Protein: 426 (aa)
MCEGFIEIFIRQHMNNGAEDVLKFQGNDSTIDHFRLILRVGDSLLVGGRNVIYNLSIYDLSEHNRVLWNSAEDDMKMCMVKGKDEESCQNYIRILTITTPGILLACGTNSYRPLCHFYNITGSKYNIEKVKPGQAICPYGPMHNSTSVFVDSDLYTGTVADFSGNDPIIYREPLQTDQFDSLSLNAPNFVGSFSFGDFVYFFFRETAVEFINCGKSVYSRVARVCKWDKGGPHRFRNRWTTFLKSRLNCSIPGDFPFYFDEIQSNSDLVEGIYGNTNARLIYGVFTTSHNAIAGSAICAFSLQEISDTFEGNFKEQPNIHSTWKPVEKSKIPDPRPGVCHNDTRNLPEGTLTFIKTHSLMDENVSAYFGLPILTRVGTPYRFTQIAVDPQIKTPGGRTYDVIFVGTGRFSERNNKKNQQKKIMALL
| Type | Start | End | Length |
| CDS |
528 |
669 |
142 |
| CDS |
761 |
906 |
146 |
| CDS |
4712 |
4792 |
81 |
| CDS |
5913 |
6034 |
122 |
| CDS |
6477 |
6618 |
142 |
| CDS |
6852 |
6940 |
89 |
| CDS |
7307 |
7411 |
105 |
| CDS |
12619 |
12814 |
196 |
| CDS |
14489 |
14597 |
109 |
| CDS |
22715 |
22811 |
97 |
| CDS |
28131 |
28179 |
49 |
| intron |
670 |
760 |
91 |
| intron |
907 |
4711 |
3805 |
| intron |
4793 |
5912 |
1120 |
| intron |
6035 |
6476 |
442 |
| intron |
6619 |
6851 |
233 |
| intron |
6941 |
7306 |
366 |
| intron |
7412 |
12618 |
5207 |
| intron |
12815 |
14488 |
1674 |
| intron |
14598 |
22714 |
8117 |
| intron |
22812 |
28130 |
5319 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001962588 |
GF15536 [Drosophila ananassae] gb|EDV31809.1| GF15536 [Drosophila ananassae] |
1e-176 |
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001627 |
Semaphorin/CD100 antigen |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF01403.14 |
Sema domain |
1.7e-131 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000374076 |
| H. melpomene |
HMEL012513-PA |
| C. quinquefasciatus |
CPIJ001595 |
| P. vanderplanki |
Pv.17467 |
| H. sapiens |
ENSP00000424388 |
| S. invicta |
SI2.2.0_05024 |
| A. mellifera |
GB11468-PA |
| P. vanderplanki |
Pv.10056 |
| B. mori |
BGIBMGA003697-TA |
| N. vitripennis |
NV17624-PA |
| H. sapiens |
ENSP00000350770 |
| H. sapiens |
ENSP00000422997 |
| M. musculus |
ENSMUSG00000001227 |
| H. sapiens |
ENSP00000452815 |
| H. sapiens |
ENSP00000442040 |
| H. sapiens |
ENSP00000348276 |
| H. sapiens |
ENSP00000346786 |
| B. mori |
BGIBMGA004093-TA |
| H. sapiens |
ENSP00000453661 |
| H. sapiens |
ENSP00000357908 |
| D. plexippus |
DPOGS203791PA |
| H. sapiens |
ENSP00000324857 |
| P. humanus |
PHUM141790-PA |
| T. castaneum |
TC030630-GA |
| T. castaneum |
TC014179 |
| A. aegypti |
AAEL003063 |
| H. sapiens |
ENSP00000257414 |
| H. sapiens |
ENSP00000465722 |
| H. sapiens |
ENSP00000422275 |
| H. sapiens |
ENSP00000467290 |
| H. sapiens |
ENSP00000374079 |
| H. sapiens |
ENSP00000357910 |
| H. sapiens |
ENSP00000374084 |
| M. musculus |
ENSMUSG00000027200 |
| H. sapiens |
ENSP00000344148 |
| D. plexippus |
DPOGS211787PA |
| H. sapiens |
ENSP00000446152 |
| H. sapiens |
ENSP00000301293 |
| H. sapiens |
ENSP00000357909 |
| N. vitripennis |
NV12392-PA |
| T. castaneum |
TC010143 |
| A. gambiae |
AGAP008656 |
| D. melanogaster |
FBgn0016059 |
| H. sapiens |
ENSP00000425364 |
| H. sapiens |
ENSP00000374083 |
| P. humanus |
PHUM062540-PA |
| M. musculus |
ENSMUSG00000038777 |
| S. invicta |
SI2.2.0_80445 |
| D. melanogaster |
FBgn0011259 |
| C. quinquefasciatus |
CPIJ000027 |
| A. aegypti |
AAEL002653 |
| H. sapiens |
ENSP00000345512 |
| H. sapiens |
ENSP00000282394 |
| A. gambiae |
AGAP005742 |