MidgeBase gene description page [Pn.10584]
Outline
| Gene ID | Pn.10584 |
| Type | Protein coding gene |
| Scaffold | PnScaf11877 |
| Start | 16955 |
| End | 17244 |
| Direction | + |
Sequence
Transcript: 219 (bp)
ATGGTAAATGTTTTGAAAGGAGTTCTCGTTGAATGCGATCCTGCGATGAAACAATTTCTTCTGCATTTAGATGAGAAACTGATATTGGGTCGAAATTTTATTCTGCAGGAATTGGACGAGAAACATTTGTTTATTGCTTCAGATATTGTTGAAACTCTGCAAGCTAAAATTGATGATTTAATGGATAGGATAAGCTTTCCACTACACGAAAAGGAAAAC
Protein: 73 (aa)
MVNVLKGVLVECDPAMKQFLLHLDEKLILGRNFILQELDEKHLFIASDIVETLQAKIDDLMDRISFPLHEKEN
| Type | Start | End | Length |
| CDS |
16955 |
16989 |
35 |
| CDS |
17058 |
17241 |
184 |
| intron |
16990 |
17057 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002021498 |
GL26481 [Drosophila persimilis] ref|XP_002133059.1| GA28879 [Drosophila pseudoobscura pseudoobscura] gb|EDW25341.1| GL26481 [Drosophila persimilis] gb|EDY70461.1| GA28879 [Drosophila pseudoobscura pseudoobscura] |
1e-27 |
| InterPro |
IPR009400 |
Nucleotide excision repair, TFIIH, subunit TTDA |
|
| Gene Ontology(BP) |
GO:0006289 |
nucleotide-excision repair |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF01166.13 |
TSC-22/dip/bun family |
0.025 |
| Pfam |
PF06331.7 |
Transcription factor TFIIH complex subunit Tfb5 |
4.5e-27 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL012891 |
| M. musculus |
ENSMUSG00000034345 |
| D. plexippus |
DPOGS200974PA |
| H. sapiens |
ENSP00000415032 |
| D. melanogaster |
FBgn0259719 |
| P. vanderplanki |
Pv.11215 |
| C. quinquefasciatus |
CPIJ802066 |
| A. gambiae |
AGAP013775 |
| A. aegypti |
AAEL012900 |
| P. humanus |
PHUM268950-PA |