MidgeBase gene description page [Pn.10540]
Outline
| Gene ID | Pn.10540 |
| Type | Protein coding gene |
| Scaffold | PnScaf11837 |
| Start | 9044 |
| End | 47147 |
| Direction | - |
Sequence
Transcript: 423 (bp)
ATGGCAGCATTTGTGGCTAAGCAGATGGTCGGAAATAAGCTCAGCGCCGTCAAAGGAGCTGTTGGTGGCGATGATCAGACTGATGAAGATAAGGAGAAGGCAGAGGAGGAGGAGAGAGAGCGACTTGAAGCAATCCGCGAAGCTGAGGAGCGCCGAAAAGAGAAGCATCGTAAAATGGAGGAGGAACGCGAAAAGATGCGCCAGGAGATAAGAGACAAATACAACATAAAGAAGAAGGAGGAAGTCGTGGAACAGCCTCCGCAAGAGGAACCCAATCCGCTCATGCGAAAGAAGAAGACGCCGGAAGAGCTCGCCGCCGAAGCCGAGGCCGAGGATCTCGACGACTTTACCAAATTGAAAAATTCAATAGAAACACAAGTGAACGAATTAAAAACACAAATCGAAAGCAAATGTGTTATGCAG
Protein: 141 (aa)
MAAFVAKQMVGNKLSAVKGAVGGDDQTDEDKEKAEEEERERLEAIREAEERRKEKHRKMEEEREKMRQEIRDKYNIKKKEEVVEQPPQEEPNPLMRKKKTPEELAAEAEAEDLDDFTKLKNSIETQVNELKTQIESKCVMQ
| Type | Start | End | Length |
| CDS |
9047 |
9117 |
71 |
| CDS |
11447 |
11579 |
133 |
| CDS |
19255 |
19418 |
164 |
| CDS |
47093 |
47147 |
55 |
| intron |
9118 |
11446 |
2329 |
| intron |
11580 |
19254 |
7675 |
| intron |
19419 |
47092 |
27674 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_001156645 |
complexin [Acyrthosiphon pisum] ref|NP_001156646.1| complexin [Acyrthosiphon pisum] dbj|BAH72206.1| ACYPI007078 [Acyrthosiphon pisum] dbj|BAH72407.1| ACYPI007078 [Acyrthosiphon pisum] |
2e-48 |
| InterPro |
IPR008849 |
Synaphin |
|
| Gene Ontology(BP) |
GO:0006836 |
neurotransmitter transport |
|
| Gene Ontology(MF) |
GO:0019905 |
syntaxin binding |
|
| Pfam |
PF05758.7 |
Ycf1 |
3 |
| Pfam |
PF02724.9 |
CDC45-like protein |
3.9 |
| Pfam |
PF05835.7 |
Synaphin protein |
1.5e-43 |
| Pfam |
PF12013.3 |
Protein of unknown function (DUF3505) |
0.75 |
| Pfam |
PF10721.4 |
Protein of unknown function (DUF2514) |
7 |
| Pfam |
PF02030.10 |
Hypothetical lipoprotein (MG045 family) |
0.65 |
| Pfam |
PF09581.5 |
Stage III sporulation protein AF (Spore_III_AF) |
6.8 |
| Pfam |
PF01412.13 |
Putative GTPase activating protein for Arf |
0.11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS200542PA |
| A. aegypti |
AAEL007518 |
| A. mellifera |
GB12095-PA |
| P. vanderplanki |
Pv.01139 |
| S. invicta |
SI2.2.0_16095 |
| A. aegypti |
AAEL007513 |
| N. vitripennis |
NV10771-PA |
| H. melpomene |
HMEL016862-PA |
| P. humanus |
PHUM252930-PA |
| T. castaneum |
TC010644 |
| B. mori |
BGIBMGA010781-TA |
| D. melanogaster |
FBgn0041605 |
| H. sapiens |
ENSP00000424305 |
| P. vanderplanki |
Pv.06480 |
| A. gambiae |
AGAP003509 |