MidgeBase gene description page [Pn.10521]
Outline
| Gene ID | Pn.10521 |
| Type | Protein coding gene |
| Scaffold | PnScaf11795 |
| Start | 47105 |
| End | 52257 |
| Direction | - |
Sequence
Transcript: 1467 (bp)
ATGGTCTATTCGAAAGTTCAGTCGTGGAATGATGTGAACGAGTGCGAGCGAAATAATAACAACAATAACGAGTCAGTGAAGAGTGACATTCTGCGGACTCCGCCACGATATATTCCCAAGCTCAAACGATCATCAAAGTCACCGTCACCGAGTCGCTCGAACGATGGCGAGAGCGACGACGACGAGGGAAGCTATCGAGAGGGCTCGAACTCAAGTCCACCGCCACCGCAGCGCGTCAAGGACGATCACATGAGGCCCCTCAATCTGATCACCGACTCACGGCACTCGCCGTCACCACCACTCTCGAACAGCGCGGCCGCGGCCAGCACGATGAACAGCATGGCGGCACTAGCGGCGCTCCAGTCGCAGCTTCCGCTCGCTCCGCTCTTCCTCCAGAATCAGCTGGGGATGAGCGCTCTTGCGGGACTTCCAGCGGGTGACATGAACGCACTTCAGCAGGCGCTGCAAGCACAACAAGCGCAGTTCCAGCAGCAACTGCAGAACTACATGCTGCTGCAGGCGAGCGCCAATCACACGCCCACACAGGCCGCCGCCGCACAGATTCTCATCCAGAGTCAGGTGCAGCAGGCGATGGCGCAGGCGGCGCAGCAGCTGCAGGCGCTGCAGAAGCAACAGCAGAACAACCTCAAGCGAACGCACTCGCAGAGTGAGTCATCGAGCATGATGACACGAAGTCCGCTGCACACGCCCGAGAGTCCGCTCCTTTCCAGCGGCGGCAGTGGCAACCACAGCAGTAGCCGCACGACGCCACCGAACTCGAATACTGCACACTTGTCGGCAGCGGGCGGCATTTGTACGCCAGCGACGCCGAACTCGGGCACACACCCGCCGACGAAGACTCTCACAACGGCGGCACGCACGATGGAGGCGGCCACCGAGGAGACGACCGACCTCGAGGAGCTCGAGCAGTTCTCGAAGACGTTCAAGCAGCGCCGCATCAAGCTCGGCTTTACGCAGGGCGACGTGGGCCTCGCGATGGGCAAGCTCTACGGCAACGACTTCTCACAGACGACCATATCGCGCTTCGAGGCGCTCAACCTGAGCTTCAAGAACATGTGCAAGCTGAAACCGCTGCTGCAGAAGTGGCTCGAGGACGCCGACCGCAGTCTTAACAATCCAGGCGGAATGTTCGGGCCGAGCACGCTGAGCAGCCCGCTGTCAACGCCTGAGAACATGGGCCGGCGTCGGAAGAAGCGCACCTCGATCGAAACGTCGGTTCGAACGGCGCTCGAGAAGGCGTTCTTCATCAACTCGAAGCCGACGAGTCAGGAGATTGGAAATCTGGCCGAGAACTTGTGCATCGATAAGGAAGTGGTGCGTGTGTGGTTCTGCAATCGTCGACAGAAAGAGAAGCGAACGCATCCCGGCATGAACCCCGAAAGCCCGGAAGATTCGCTCGGCAACGGCTCGAGCATGTTCGACTTCTCGTCGACGATGAAGCAAGAA
Protein: 489 (aa)
MVYSKVQSWNDVNECERNNNNNNESVKSDILRTPPRYIPKLKRSSKSPSPSRSNDGESDDDEGSYREGSNSSPPPPQRVKDDHMRPLNLITDSRHSPSPPLSNSAAAASTMNSMAALAALQSQLPLAPLFLQNQLGMSALAGLPAGDMNALQQALQAQQAQFQQQLQNYMLLQASANHTPTQAAAAQILIQSQVQQAMAQAAQQLQALQKQQQNNLKRTHSQSESSSMMTRSPLHTPESPLLSSGGSGNHSSSRTTPPNSNTAHLSAAGGICTPATPNSGTHPPTKTLTTAARTMEAATEETTDLEELEQFSKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADRSLNNPGGMFGPSTLSSPLSTPENMGRRRKKRTSIETSVRTALEKAFFINSKPTSQEIGNLAENLCIDKEVVRVWFCNRRQKEKRTHPGMNPESPEDSLGNGSSMFDFSSTMKQE
| Type | Start | End | Length |
| CDS |
47108 |
47429 |
322 |
| CDS |
47580 |
48457 |
878 |
| CDS |
48527 |
48630 |
104 |
| CDS |
51157 |
51210 |
54 |
| CDS |
52149 |
52257 |
109 |
| intron |
47430 |
47579 |
150 |
| intron |
48458 |
48526 |
69 |
| intron |
48631 |
51156 |
2526 |
| intron |
51211 |
52148 |
938 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_310195 |
AGAP009500-PA [Anopheles gambiae str. PEST] gb|EAA05862.4| AGAP009500-PA [Anopheles gambiae str. PEST] |
1e-85 |
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR010982 |
Lambda repressor-like, DNA-binding domain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| InterPro |
IPR000327 |
POU-specific |
|
| InterPro |
IPR013847 |
POU domain |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF12698.2 |
ABC-2 family transporter protein |
0.4 |
| Pfam |
PF10400.4 |
Virulence activator alpha C-term |
9.6 |
| Pfam |
PF00157.12 |
Pou domain - N-terminal to homeobox domain |
1.9e-39 |
| Pfam |
PF03938.9 |
Outer membrane protein (OmpH-like) |
1.9 |
| Pfam |
PF00046.24 |
Homeobox domain |
1.5e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ801882 |
| A. gambiae |
AGAP009500 |
| D. melanogaster |
FBgn0085424 |
| A. aegypti |
AAEL017445 |
| P. vanderplanki |
Pv.02581 |