MidgeBase gene description page [Pn.10445]
Outline
| Gene ID | Pn.10445 |
| Type | Protein coding gene |
| Scaffold | PnScaf11632 |
| Start | 2720 |
| End | 3923 |
| Direction | + |
Sequence
Transcript: 1023 (bp)
ATGGAGGCTAAGGAGAGCTACAAAGACCGACAAGAAAATGAATTAGAAGTGCTACGCTCAATTTTTAATGTTGATGATGTGATTGACTTACGAAAGAAAGATGACAAATGGACACCACTGGATCTCAGAATAAAGTTGTCTCCTCAACGAGACTCAAAGGTTTCGCAAGCTTATTGCGGCATCGAGCTGAGAGTGATCTGCCCGAAAAACTATCCAAAGCTATGCCCCAAAATTAGTCTCGAGAATGCGCGAGGACTGTCAAATGCCGACGTCTCAACACTCCTCAATCAGTTGAACAAGGAAGCTTACGGCCTCAGGGGCGAGGTCATGATTTTTGAGCTTTGTCAGCTGGTTCAGAGCTTCCTTCACGAGCGAAATTTCCCACCGAAAGTCACGGGCAGTTTCTATGATGAGATGCTGGCGAGTAAGCAGAAGCGCGATTTGGACAAGCTTGCGCAACAGCAGATCGAGGAGGAGAAGAGGCGTCAGTACATTCAGGACGAGATTTTGAAGCGAAAGGAGCAGCTAAGAAAGGACAACCGCACAAGAAGGTCGACAGCTAACGACAGCCCAATGCACCACATTTCGTCCGAGAGCTCAAACTCGGATATGAGGTTTTTCTTTGAGACGTGCGAGGACCACAACTGCAGTGAAAATCTTTACTTTCCGGCCGACAGCAAGAAAGTCCTCAAAGGAGCCTGCATAGGCCACTCGCTCAAGGGTTGCATAAACTTCTCCGGTATCGACACGGCAACCGGACGGCTCTACTACCTTACAGAATGGACCATCAAGAATGCTTCGCTGGAGGCCAAAAATCTCAAAGTCGACGAGGTGATTGAGACGATCGAGAAGAAGGTCGGCGCGCTCGTTAAGCTGCGACACAAAAATCTCATCGCATACGACGGTGTTTTGTGTACAAAGCGAAAGGACTCGCTCACGGTGATTCTGGCACAAGAGTTTTTGCACGGCATAAGCTGGCGTGACGCACGGAAATCTCCTCGACTCGAGCGTCTTCATCGACGC
Protein: 341 (aa)
MEAKESYKDRQENELEVLRSIFNVDDVIDLRKKDDKWTPLDLRIKLSPQRDSKVSQAYCGIELRVICPKNYPKLCPKISLENARGLSNADVSTLLNQLNKEAYGLRGEVMIFELCQLVQSFLHERNFPPKVTGSFYDEMLASKQKRDLDKLAQQQIEEEKRRQYIQDEILKRKEQLRKDNRTRRSTANDSPMHHISSESSNSDMRFFFETCEDHNCSENLYFPADSKKVLKGACIGHSLKGCINFSGIDTATGRLYYLTEWTIKNASLEAKNLKVDEVIETIEKKVGALVKLRHKNLIAYDGVLCTKRKDSLTVILAQEFLHGISWRDARKSPRLERLHRR
| Type | Start | End | Length |
| CDS |
2720 |
2776 |
57 |
| CDS |
2860 |
3777 |
918 |
| CDS |
3873 |
3920 |
48 |
| intron |
2777 |
2859 |
83 |
| intron |
3778 |
3872 |
95 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_320188 |
AGAP012368-PA [Anopheles gambiae str. PEST] gb|EAA00405.4| AGAP012368-PA [Anopheles gambiae str. PEST] |
9e-77 |
| InterPro |
IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
|
| InterPro |
IPR015515 |
Serine/threonine-protein kinase, GCN2-like |
|
| InterPro |
IPR006575 |
RWD domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF11539.3 |
Protein of unknown function (DUF3228) |
0.028 |
| Pfam |
PF12701.2 |
Scd6-like Sm domain |
0.074 |
| Pfam |
PF05773.17 |
RWD domain |
5.9e-19 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000372174 |
| H. sapiens |
ENSP00000453575 |
| T. castaneum |
TC009201 |
| D. melanogaster |
FBgn0019990 |
| B. mori |
BGIBMGA004872-TA |
| P. humanus |
PHUM514850-PA |
| N. vitripennis |
NV19049-PA |
| A. gambiae |
AGAP012368 |
| A. mellifera |
GB18038-PA |
| S. invicta |
SI2.2.0_07133 |
| A. aegypti |
AAEL000924 |
| P. vanderplanki |
Pv.04390 |
| H. sapiens |
ENSP00000453148 |
| H. sapiens |
ENSP00000263791 |
| D. plexippus |
DPOGS204018PA |
| A. mellifera |
GB16061-PA |
| C. quinquefasciatus |
CPIJ005884 |
| M. musculus |
ENSMUSG00000005102 |
| H. melpomene |
HMEL005913-PA |