MidgeBase gene description page [Pn.10433]
Outline
| Gene ID | Pn.10433 |
| Type | Protein coding gene |
| Scaffold | PnScaf11605 |
| Start | 1321 |
| End | 2942 |
| Direction | + |
Sequence
Transcript: 1134 (bp)
ATGTTGACCGCTCTGCTTGAGGTGATTTTGCTGGCCGCTTTCGTGACTCTTTCGCGAGCGCAAATCTCAGTGACAACTGCCAGTGGCACGCGAGCCCCTCCAGGCCCCTTTCGCTCCGGTCAGCTGATTTTCGAGGAAAACTTTAATTTTCTCGATCTCGAGACGTGGCAGCACGAGAGCACAATGACGGGAGGTGGAAACAATGAGTTTCAGTGGTACACCAACAACCGCTCGAACTCGTACACAGAGGACGGCGTGCTGCACATCGTGCCGACAATTTTCGCCGACGACGCTGGCGAGGAATTTCTCAGGGGAGGAACGCTGGAGTTGTATGGCGGAGAGCCGGCCGGCGAGTGCACAAATCACGCCAACAGAGGCTGCATGCGAACGGGAACGCACGAGGACATTCTGCCGCCGGTGAAGAGCGCCAGACTGCGCAGCGTTTTCTCCTTTAACTTCAAGTACGGCATCATGGAGGTGCGCGCCAAAATGCCCACCGGCGACTGGCTCTGGCCGGCGATTTGGCTGATGCCGAAGTCGAATGTGTACGGCACGTGGCCGAGCAGCGGCGAAATCGATTTGCTCGAGTCGCGCGGCAACCGGAAGCTCTTCGACCAGCAGGGCGTAAATGTCGGCGTCAAGCAGGTCGAGAGCACGCTGCACTTCGGTCCGGCGCCTTGGCTCAACGGCTTCCACCTCACGAACTTCGTGGCGCACCGCGACGGCGGTTTCAACGAGGACTTTCACGTGTACCGCTTGGGCTGGACGCCGACCACGATCGAGTTCTCGGTCGACGACCAAATCATCGGTTTTGTGAATGCGAGCGAGACGGGCGGCTTCTGGAACCGCGGCCGCTTCGATGAGCGCGAGCCGGGACGAGACAATCCGTGGAAGCGGCACACGCTGATGGCGCCCTTTGACCAGGAGTTCTTCATCATCATGAATGTGGCCGTGGGCAGCACCGTTTACTTCGGCGACGACCTGGTCAACGAGGGCCACGACAAGCCGTGGCGCAATGACGACAAATTTCCGATGACGAAATTCTGGGAGGCGCGCGACGACTGGCTGCCCACTTGGAGTCGCGGCACCGACGCAAGTCATTTGCAGGTCGACTACATTCGTGTGTATGCCCTT
Protein: 378 (aa)
MLTALLEVILLAAFVTLSRAQISVTTASGTRAPPGPFRSGQLIFEENFNFLDLETWQHESTMTGGGNNEFQWYTNNRSNSYTEDGVLHIVPTIFADDAGEEFLRGGTLELYGGEPAGECTNHANRGCMRTGTHEDILPPVKSARLRSVFSFNFKYGIMEVRAKMPTGDWLWPAIWLMPKSNVYGTWPSSGEIDLLESRGNRKLFDQQGVNVGVKQVESTLHFGPAPWLNGFHLTNFVAHRDGGFNEDFHVYRLGWTPTTIEFSVDDQIIGFVNASETGGFWNRGRFDEREPGRDNPWKRHTLMAPFDQEFFIIMNVAVGSTVYFGDDLVNEGHDKPWRNDDKFPMTKFWEARDDWLPTWSRGTDASHLQVDYIRVYAL
| Type | Start | End | Length |
| CDS |
1321 |
1535 |
215 |
| CDS |
1895 |
2185 |
291 |
| CDS |
2312 |
2939 |
628 |
| intron |
1536 |
1894 |
359 |
| intron |
2186 |
2311 |
126 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312115 |
AGAP002799-PA [Anopheles gambiae str. PEST] gb|EAA07707.1| AGAP002799-PA [Anopheles gambiae str. PEST] |
1e-115 |
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| InterPro |
IPR000757 |
Glycoside hydrolase, family 16 |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Pfam |
PF00722.16 |
Glycosyl hydrolases family 16 |
4.5e-20 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.11327 |
| Pn.10432 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA000353-TA |
| A. aegypti |
AAEL003889 |
| A. aegypti |
AAEL009178 |
| A. gambiae |
AGAP002798 |
| C. quinquefasciatus |
CPIJ004323 |
| H. melpomene |
HMEL016918-PA |
| D. melanogaster |
FBgn0040322 |
| C. quinquefasciatus |
CPIJ004324 |
| A. gambiae |
AGAP004455 |
| P. vanderplanki |
Pv.17204 |
| C. quinquefasciatus |
CPIJ004325 |
| C. quinquefasciatus |
CPIJ003613 |
| C. quinquefasciatus |
CPIJ004320 |
| A. aegypti |
AAEL009176 |
| A. gambiae |
AGAP002796 |
| D. plexippus |
DPOGS215599PA |
| T. castaneum |
TC002295 |
| C. quinquefasciatus |
CPIJ004321 |
| A. gambiae |
AGAP002799 |
| P. vanderplanki |
Pv.07967 |
| P. vanderplanki |
Pv.07968 |