MidgeBase gene description page [Pn.10420]
Outline
| Gene ID | Pn.10420 |
| Type | Protein coding gene |
| Scaffold | PnScaf11560 |
| Start | 1328 |
| End | 2788 |
| Direction | + |
Sequence
Transcript: 1458 (bp)
ATGAGAGCTCTGAGCGCTGATAATAATGACACAATTACTGTCATTATCACAAACAGATGTAGCGGGAAAAAGTATTTGCGGAAACTTCCAAACGTGTCCGTTATCATAACATTCCACAACGAAATATGGAGTGTGTTGCTGCGATGCGTACACTCGATATACAACCGATCCCCAAAGGAGCTTCTGCACGAGATAATTTTAATCAATGACGGAAGTACGTTCGGAGAACTCTATGAACCGCTACAGCGATACTTTAACGGCTCGTTTCAAAGTAAAGTCAAAATTCACATCAACGACAAGCGAGAGGGATTGATTCGAGCGCGAATGATTGGCGCGAGGCTGGCGGAGGGAGAAGTTATTGTGTTTCTCGACTCTCACATGGAAGTCACCAACACGTGGCTTCCGCCGCTTTTGGAGCCTCTGGTTTACAATCCCACGTTTGCAACTGTGCCAATAGTCGAAAGCATGTCGCACGATACCTTTGCGTATCAATTCATCGGGCATGGATATCGAGGCACGTTTGACTGGAACTTTAGGTACCAGTGGCTTCCGAGGAAACCTGCATCCAATTTGGCCGACAACTACGAGTTATCGAGCATGACGGGTGGTGCATATGCAATAAGAAGGAACCACTTTTTCTACCTCGGAGGCTACGATGAGGAGCTGAAGATTTGGAACGGCGAAAATTATGAGCTCTCGCTAAAGCTTTGGCTCTGTTCGGGTGGAATTTTTACAGTGCCTTGCTCGCGAATTATTCATTTAAGCAAATTGCATACGGCCTACAGAACCTCGGGCGATGGCACAGACTTCATTGGGAGGAATCTCAAGCGAGTCGCAGAGGTTTGGCTCGACGACTACAAGAAGTATTTTTACAGGGGCGATCAGCAAAGGTACGACAAAATCGACGCGGGAGATTTGAGTAAGCAGTTCGAGCTTAAGGAGAGGCTGAAGTGCAAGCCATTCAAATACTTCCTCGACGTCGTCGCACCTGAGATGCTCGAAAGATACCCGCTGGAGCCGCAGTACTTCGCTGCAGGTTCCGTTCGAAATCATCAGCTGAAGCAGTGTGTCGGCATAGACCACGGAACATACGCAAAGCCTCTCGTGCTGGTCAACTGCAGCAACGATTTAAAGCGACCGCTAAAGGGCTCAGATTTCACCCTCACTTTCGAAAAAAGCATAAAGTACAACGATACTAGCGACCAGTGTCTCAATGGCGACAGCATGTCTCTGAGCAATTGTCATCACCAAGGCAGAAACCAGCACTGGATCTTCAACGTGACGACTAGACAGATAAATTACCGAAACTCGGGTCAGTGCCTCACTGGGGTGACCTACAACGGAGCGCTGACCTTGGGCGAATGCAATGAAAGGTCGCCGTTCCAAAAATGGTCATGGGGCTTTGAGAATGTGACAGCTCTCACTGACTGGAGTAATACGGGAATAAAAGTAAATTAT
Protein: 486 (aa)
MRALSADNNDTITVIITNRCSGKKYLRKLPNVSVIITFHNEIWSVLLRCVHSIYNRSPKELLHEIILINDGSTFGELYEPLQRYFNGSFQSKVKIHINDKREGLIRARMIGARLAEGEVIVFLDSHMEVTNTWLPPLLEPLVYNPTFATVPIVESMSHDTFAYQFIGHGYRGTFDWNFRYQWLPRKPASNLADNYELSSMTGGAYAIRRNHFFYLGGYDEELKIWNGENYELSLKLWLCSGGIFTVPCSRIIHLSKLHTAYRTSGDGTDFIGRNLKRVAEVWLDDYKKYFYRGDQQRYDKIDAGDLSKQFELKERLKCKPFKYFLDVVAPEMLERYPLEPQYFAAGSVRNHQLKQCVGIDHGTYAKPLVLVNCSNDLKRPLKGSDFTLTFEKSIKYNDTSDQCLNGDSMSLSNCHHQGRNQHWIFNVTTRQINYRNSGQCLTGVTYNGALTLGECNERSPFQKWSWGFENVTALTDWSNTGIKVNY
| Type | Start | End | Length |
| CDS |
1328 |
2785 |
1458 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001864263 |
N-acetyl galactosaminyl transferase 6 [Culex quinquefasciatus] gb|EDS39933.1| N-acetyl galactosaminyl transferase 6 [Culex quinquefasciatus] |
1e-103 |
| InterPro |
IPR000772 |
Ricin B lectin domain |
|
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
2.8e-09 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
3.2e-27 |
| Pfam |
PF13716.1 |
Divergent CRAL/TRIO domain |
0.04 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
3.4e-07 |
| Pfam |
PF00652.17 |
Ricin-type beta-trefoil lectin domain |
2.7e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00460 |
| P. vanderplanki |
Pv.08089 |