MidgeBase gene description page [Pn.10413]
Outline
| Gene ID | Pn.10413 |
| Type | Protein coding gene |
| Scaffold | PnScaf11532 |
| Start | 8569 |
| End | 10562 |
| Direction | - |
Sequence
Transcript: 1506 (bp)
ATGGCAGAAGGTTCATCAAATCGCATTACAGTGACGGTGAAAACACCGAAAGACAAGAAAGATATAACAGTGGAAGAGGATGCGTCAGTGGAAAAGTTCAAAGTTCTCGTCGCCGAGGTGTTTGAGGCTGAGGTCGAGCAGTTGTGCTTGATTTTCGCTGGTAAAATCATGAAGGACGCAGACACTCTCAAAAGTCACAACATTAAAGACGGCCTGACAGTTCATCTGGTCATCAAGGCGCCACCGAAGCCCGAGCCCGAAGGTCCTACCCGCAGGCCGGCGGACGTGCGTCAGACACCCTTCGGCCTCAATCAGATCGGCGGCCTCTCGGGACTGGAGGCGCTCGGCGCCAGTTCCGGCACGTACATGGACATGCAGTCCCGGATGCAGCACGAGCTGATGGGCAACCCCGAGCTGATGCGAACAATTCTCGACAACCCGCTGGTCCAGCAAATGCTTAACAATCCCGACACGATGCGAACACTCATCACAAGCAATCCGCAAATGCAAGACCTGATGCAGCGCAATCCCGAAATCTCCCACATGCTCAACAATCCCGACTTGTTGCGGCAGACGATGGAGCTGGCGCGAAACCCGGCCATGCTGCAGGAGCTCATGCGCTCGCACGACCGCGCCATGTCCAACTTGGAGTCGGTCCCGGGCGGCTACAACGCGCTCCACCGCATCTACCGCGACATCCAGGAGCCGATGTTGAACGCCACTTCCGGCGCGTTCGCGTCGAATCCGTTCAGCGGCTTGGTGGACAATGGCGGCGCCGAGAATCCCCAGCAGGGCAGTGAGAACCGTGAGCCACTGCCGAATCCGTGGGGTGGCGGCGGCGGAAGCCAGCCGAACCGTCCGCCCAACAACGTCCTCAACACGCCAGCTATGCAGAGCCTCTTGCAGCAGATGTCCGAGAATCCCGAGATGATGCAGAACATGATGAACGCTCCGTACATGCGCTCGATGATGGAGGCGCTCTCGCAGGACCCGAACATGGCGGCCAACCTCATCAGCCAGAGCCCGCTGCTGCAGGCCAATCCACAGCTTCAAGATCAAATGCGAACGATGATGCCACAGTTTCTGCAGCAGATGCAGAATCCGGAGGTCCAGAACATGCTTACCAATCCCGAGGCGCTCAACGCGATCCTCCAGATCCAGCAGGGCATGGAGCAGCTGCGTCAGGCGGCGCCCGGGCTTGTTGGCTCCATGGGCATCCCTCCGCCGCCGCCCGGCACCAACCAACCGCCTCAGACCGGCAACGTACCGACTCCAGCTAACCAGCAACTGTTCAGTGACTTCATGCAGCGCATGCTGAACGGAATGACCAATCAGGGCACGCAGCCGAATCTGCCGCCCGAACAGCGATACCAGTCGCAGTTGGAGCAGCTCGCCGCCATGGGGTTCGTCAATCGTGAAGCCAACTTGCAAGCATTGATTGCGACATTCGGCGACATAAATGCCGCCGTGGAGAGGTTACTGGCATTGGGTTCGCTGTCGCTGAGC
Protein: 502 (aa)
MAEGSSNRITVTVKTPKDKKDITVEEDASVEKFKVLVAEVFEAEVEQLCLIFAGKIMKDADTLKSHNIKDGLTVHLVIKAPPKPEPEGPTRRPADVRQTPFGLNQIGGLSGLEALGASSGTYMDMQSRMQHELMGNPELMRTILDNPLVQQMLNNPDTMRTLITSNPQMQDLMQRNPEISHMLNNPDLLRQTMELARNPAMLQELMRSHDRAMSNLESVPGGYNALHRIYRDIQEPMLNATSGAFASNPFSGLVDNGGAENPQQGSENREPLPNPWGGGGGSQPNRPPNNVLNTPAMQSLLQQMSENPEMMQNMMNAPYMRSMMEALSQDPNMAANLISQSPLLQANPQLQDQMRTMMPQFLQQMQNPEVQNMLTNPEALNAILQIQQGMEQLRQAAPGLVGSMGIPPPPPGTNQPPQTGNVPTPANQQLFSDFMQRMLNGMTNQGTQPNLPPEQRYQSQLEQLAAMGFVNREANLQALIATFGDINAAVERLLALGSLSLS
| Type | Start | End | Length |
| CDS |
8572 |
8645 |
74 |
| CDS |
8718 |
9921 |
1204 |
| CDS |
9987 |
10118 |
132 |
| CDS |
10467 |
10562 |
96 |
| intron |
8646 |
8717 |
72 |
| intron |
9922 |
9986 |
65 |
| intron |
10119 |
10466 |
348 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001652587 |
ubiquilin 1,2 [Aedes aegypti] gb|EAT41184.1| ubiquilin 1,2 [Aedes aegypti] |
0.0 |
| InterPro |
IPR006636 |
Heat shock chaperonin-binding |
|
| InterPro |
IPR000449 |
Ubiquitin-associated/translation elongation factor EF1B, N-terminal |
|
| InterPro |
IPR015940 |
Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote |
|
| InterPro |
IPR015496 |
Ubiquilin |
|
| InterPro |
IPR000626 |
Ubiquitin |
|
| InterPro |
IPR019955 |
Ubiquitin supergroup |
|
| InterPro |
IPR009060 |
UBA-like |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00443.24 |
Ubiquitin carboxyl-terminal hydrolase |
0.34 |
| Pfam |
PF00627.26 |
UBA/TS-N domain |
1.9e-07 |
| Pfam |
PF05952.7 |
Bacillus competence pheromone ComX |
7 |
| Pfam |
PF11976.3 |
Ubiquitin-2 like Rad60 SUMO-like |
0.00052 |
| Pfam |
PF13881.1 |
Ubiquitin-2 like Rad60 SUMO-like |
0.019 |
| Pfam |
PF00240.18 |
Ubiquitin family |
5.3e-16 |
| Pfam |
PF12726.2 |
SEN1 N terminal |
0.067 |
| Pfam |
PF10302.4 |
DUF2407 ubiquitin-like domain |
0.006 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000050148 |
| A. aegypti |
AAEL007160 |
| D. plexippus |
DPOGS202527PA |
| A. gambiae |
AGAP004294 |
| H. sapiens |
ENSP00000345195 |
| T. castaneum |
TC004781 |
| H. sapiens |
ENSP00000257468 |
| M. musculus |
ENSMUSG00000008604 |
| A. mellifera |
GB18001-PA |
| H. sapiens |
ENSP00000357292 |
| N. vitripennis |
NV18924-PA |
| S. invicta |
SI2.2.0_06667 |
| B. mori |
BGIBMGA001551-TA |
| D. melanogaster |
FBgn0031057 |
| P. vanderplanki |
Pv.06539 |
| H. melpomene |
HMEL007437-PA |
| M. musculus |
ENSMUSG00000005312 |
| H. sapiens |
ENSP00000365576 |
| T. castaneum |
TC010440 |
| C. quinquefasciatus |
CPIJ016165 |
| P. humanus |
PHUM307210-PA |