MidgeBase gene description page [Pn.10407]
Outline
| Gene ID | Pn.10407 |
| Type | Protein coding gene |
| Scaffold | PnScaf11515 |
| Start | 811 |
| End | 3599 |
| Direction | + |
Sequence
Transcript: 1635 (bp)
ATGATGAATATTAATGGAAAGGAAAGTCTTTGGATTGATTTTAAGTCATCGATTGGCCCCATACAGAACCGGGGCTGGCGGACAGGTGACATGGACAAAGATTCTGGTCTAAGTGGCATGAAACTCCTCGAGAACTCGCAAATGGGTTCAGCTCAGGGTACTTATACGGATTGCGGAACTGACTATGCGGAAGTTGATCCTCGCAACATGAGCACCTTCTATAATTGCCGCAAATCACCGGACAATCCAACGCCATATGCCACGACCATGCTGATTAATTCAATGCCACCGGAAATGTGCATGAATCCGTCGCATTCGGAGCACGAAATCGGAGCGGGTGGGTCGTCGGGCACGTCAAGTCTACATTCCGATGGCAAGAACATGTACTGCATGCACTCGAAGCACTACAGTCCAGCTCCCACAAATTGGATTGATTTCCTCCCACCGCCTCCAATGGGACCGCCCCCCATCCCAGAAATGTCGTCCGACTATGGCTCCGAGCCCTTCACAGGAAGTGCCATGACTAATTGCAAGAAATCGTCGTTGAGCTCGCGCAGCGGGTCGGGACTATCGTCGAGGCAGCAGCCGCTAAACATGAACATATCACAAGGGTCTGAATACAACTACAATCATGCGACGTCGTCGAGTAAAAATTCTTCGAACAGCATGCCCCCATTTTCTAACCGTCCGTTGCCGTTTCTGTGTCACGAGTCGACGATGAATCAACAGCAACCCTACAATCACATGATGAACAACTCCAACGCATGTTGTCCCCAGCAACAGCAGCAGCAATCAATGATGAACGAGCATATCTACAATGAATACGAGCCATATCAGCAGAGGAAATTTAATTCTAGATTATGTGATAGCTACGATGCTCTGCCAAATTGCTCCAATTCCAATCAAACGACACCGACGACACTTCACAATCCGACAAGTTTCGGATCGCTCAACGACAGCTCGATTTACAAATGTTCATCTGATTGCTACTCGATTGAGCGACAGCCACGTCATAATCATCACACCCATTTTCACTTCAGCAACAACGGAAGCAACAACAACAGTAAGAGAAAACAAAAAAGCAAGCACTACCACCGGAATAACAATAACAACAATAAAAATAGCTGCAATCAGAAGCACCAGCAGAACTCGACTCAAGATGTTCTTCCCTATGAGGAAATACATGAGACGGTGGTGACGACGCCCAACCAGAGGCGCGACGCGAACTACGAGTACATTATCGGCGACGAATTTCACAGCGGCTGCGGTGGTGATGACGATGAAAACTCGTGCAATTTGGGCAAAGTGACGATCTCTGAGAACGAGGAGACAACCGAGCACGATGAGGATGCCGGCAACAGCTACTCGTGCGACGACACACTAACGGACGATGCGATTCTGGCGACAGAACAGGATCTTGAGCAGACAAACGGCAAGTCAAACGACCGGGGCTACAAGCACAATCACAGCCACAATTGCGAGCAGATGAGTCGGGATAGCGGAAGTGGTGGTGAAACATGTTGCTCATGCAGCGACACGTCTTGTGTCTATGAGGAGCCACCCACTCATCCGCCATCCGAGCCATCGTCAGTTCAAACGCTATCGGGCCAAGTGCTGCGCATTGGCGACGAAAAT
Protein: 545 (aa)
MMNINGKESLWIDFKSSIGPIQNRGWRTGDMDKDSGLSGMKLLENSQMGSAQGTYTDCGTDYAEVDPRNMSTFYNCRKSPDNPTPYATTMLINSMPPEMCMNPSHSEHEIGAGGSSGTSSLHSDGKNMYCMHSKHYSPAPTNWIDFLPPPPMGPPPIPEMSSDYGSEPFTGSAMTNCKKSSLSSRSGSGLSSRQQPLNMNISQGSEYNYNHATSSSKNSSNSMPPFSNRPLPFLCHESTMNQQQPYNHMMNNSNACCPQQQQQQSMMNEHIYNEYEPYQQRKFNSRLCDSYDALPNCSNSNQTTPTTLHNPTSFGSLNDSSIYKCSSDCYSIERQPRHNHHTHFHFSNNGSNNNSKRKQKSKHYHRNNNNNNKNSCNQKHQQNSTQDVLPYEEIHETVVTTPNQRRDANYEYIIGDEFHSGCGGDDDENSCNLGKVTISENEETTEHDEDAGNSYSCDDTLTDDAILATEQDLEQTNGKSNDRGYKHNHSHNCEQMSRDSGSGGETCCSCSDTSCVYEEPPTHPPSEPSSVQTLSGQVLRIGDEN
| Type | Start | End | Length |
| CDS |
811 |
1225 |
415 |
| CDS |
1304 |
1481 |
178 |
| CDS |
1560 |
1823 |
264 |
| CDS |
2819 |
3596 |
778 |
| intron |
1226 |
1303 |
78 |
| intron |
1482 |
1559 |
78 |
| intron |
1824 |
2818 |
995 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAC38849 |
roundabout 1 [Drosophila melanogaster] |
6e-29 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.01648 |
| Pn.04008 |
| Pn.11655 |
| Pn.00439 |
| Pn.13499 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000418117 |
| D. melanogaster |
FBgn0005631 |
| D. melanogaster |
FBgn0002543 |
| H. sapiens |
ENSP00000327536 |
| B. mori |
BGIBMGA000888-TA |
| A. aegypti |
AAEL015056 |
| P. vanderplanki |
Pv.05732 |
| H. sapiens |
ENSP00000420321 |
| A. gambiae |
AGAP010970 |
| P. humanus |
PHUM280320-PA |
| H. sapiens |
ENSP00000418344 |
| D. plexippus |
DPOGS211939PA |
| P. humanus |
PHUM175080-PA |
| A. aegypti |
AAEL015183 |
| A. aegypti |
AAEL005011 |
| D. melanogaster |
FBgn0041097 |
| A. gambiae |
AGAP010969 |
| H. sapiens |
ENSP00000441797 |
| H. sapiens |
ENSP00000417335 |
| C. quinquefasciatus |
CPIJ010116 |
| C. quinquefasciatus |
CPIJ009217 |
| A. mellifera |
GB17658-PA |
| A. gambiae |
AGAP010242 |
| H. sapiens |
ENSP00000417164 |
| P. vanderplanki |
Pv.09288 |
| T. castaneum |
TC002775 |
| A. aegypti |
AAEL010961 |
| H. sapiens |
ENSP00000420637 |
| M. musculus |
ENSMUSG00000052516 |
| M. musculus |
ENSMUSG00000032128 |
| A. aegypti |
AAEL005002 |
| T. castaneum |
TC006743 |
| H. melpomene |
HMEL012812-PA |
| H. sapiens |
ENSP00000406043 |
| A. gambiae |
AGAP010245 |
| P. vanderplanki |
Pv.09950 |
| S. invicta |
SI2.2.0_15377 |
| P. vanderplanki |
Pv.03375 |
| M. musculus |
ENSMUSG00000022883 |
| N. vitripennis |
NV50401-PA |
| H. sapiens |
ENSP00000417992 |
| A. aegypti |
AAEL006901 |
| C. quinquefasciatus |
CPIJ011943 |
| H. sapiens |
ENSP00000380903 |