MidgeBase gene description page [Pn.10404]
Outline
| Gene ID | Pn.10404 |
| Type | Protein coding gene |
| Scaffold | PnScaf11496 |
| Start | 194 |
| End | 1716 |
| Direction | + |
Sequence
Transcript: 624 (bp)
ATGGCATCGTACAAGGTCAGCTACTTCACCTTCAAAGGTCTCGGCGAGCCTGTTCGGTTCATGCTTGCCTATGCCAACGTCGATTTCACCGACAACCGCGTCGAGTGGGACGATTGGCCGGCCCTCAAGCCCAACACGCCGCTCGGTCAGATGCCGGTTCTGGAGGCAGAGGGAAGAACCTTTCACCACTCGGGTCCGATTTGTCGCTATCTCGGCAACAAATTCAACCTGAATGGCGCCAATGCGCTCGAAAATTACGAAATCGATTGCGTCGCCGAAACTGTGAACGAGCTGCGCGGAAAGGTCGCCACATGGTACTACGCTTACAAGCAGGCCAAGAACGAAAAGTACGAAAAACTCAAGAGCGAGACGCTTCCCTTCTATCTGCAGAAACTCGAAGCTCAAGCGAGCAAAAATGGCGGCTTTTTGGCGATCGAAGGCAAAGTCACTTGGGGCGACGTCTACTCGATCGGCGTGCTCGACTATGTCAGCAGTCTCATCGGCTTCAACATGCTCGAGGGCTATGAGAACCTCATGAAGGTCCGCAGCAGGATTTTTGAGGCTGAGGGCGTCCAGAAGTACATAAAGTCGCGTCCCGAAGACCGAATTCCCAACTTTTTCTCA
Protein: 208 (aa)
MASYKVSYFTFKGLGEPVRFMLAYANVDFTDNRVEWDDWPALKPNTPLGQMPVLEAEGRTFHHSGPICRYLGNKFNLNGANALENYEIDCVAETVNELRGKVATWYYAYKQAKNEKYEKLKSETLPFYLQKLEAQASKNGGFLAIEGKVTWGDVYSIGVLDYVSSLIGFNMLEGYENLMKVRSRIFEAEGVQKYIKSRPEDRIPNFFS
| Type | Start | End | Length |
| CDS |
194 |
326 |
133 |
| CDS |
397 |
564 |
168 |
| CDS |
1391 |
1713 |
323 |
| intron |
327 |
396 |
70 |
| intron |
565 |
1390 |
826 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACP27597 |
glutathione S-transferase [Chironomus tentans] |
2e-79 |
| InterPro |
IPR004046 |
Glutathione S-transferase, C-terminal |
|
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| InterPro |
IPR004045 |
Glutathione S-transferase, N-terminal |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13409.1 |
Glutathione S-transferase, N-terminal domain |
0.00027 |
| Pfam |
PF02798.15 |
Glutathione S-transferase, N-terminal domain |
1.8e-11 |
| Pfam |
PF13417.1 |
Glutathione S-transferase, N-terminal domain |
2.7e-08 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
1.3e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06995 |