MidgeBase gene description page [Pn.10395]
Outline
| Gene ID | Pn.10395 |
| Type | Protein coding gene |
| Scaffold | PnScaf11471 |
| Start | 741 |
| End | 3383 |
| Direction | - |
Sequence
Transcript: 2445 (bp)
ATGTACATGTGGAATACGTCATCCTCGTCATCGGGAACCCAAAGAACATTTAATTCTAATCCGCAATCACCGACACAGCTGGATGAGCAAGATAAGCTCCTAAGCGACGCTTTGGGCGTCGTTCGAAACAATGCAATTCTCATGAAGCGTAACCTTGATAAGAATCGCCTAATGGACGGCCTAAAGTGTGCAAGTACGATGCTCGGCGAGCTACGAACGAGCCTTTTGTCGCCCAAGAGCTACTATGAGTTGTACATGGCAGTCACCGATGAGCTCCGTTTCCTGGAAGTCTATCTGCTGGATGAATTCCAGAAGGGACACAAAATCACCGATCTGTATGAGTTGGTGCAATATGCTGGCAACATCGTCCCGCGCCTCTATCTGCTCATCACGGTCGGTCTCGTCTACATCAAATCCAATCCGGCAACGAAGAAGAGTATCATGAAGGACTTGGTCGAGATGTGCCGAGGTGTGCAGAATCCGCTTCGAGGACTTTTCCTCCGCAACTACCTGCTCACCTTGCGCAACATCCTGCCCGATACGCCGGTAGGAAAGGACGACGACAATGGCAACGTCAACGACTCTATTGACTTCATTCTCACGAATTTCGCCGAGATGAACAAGCTTTGGGTAAGGATGCAGCATCAAGGGCACTCGAGCGAGAAGTCGAGACGCGAGAAGGAGCGCGAAGAGCTGAAAATTCTCGTCGGCACCAACCTCGTTCGACTCAGTCAGCTGGACTCGGTGAATCTGGAAATCTATCAGAAAATCATTCTGCCGAGCATTCTGGAGCAAGTTGTCAGCTGTCGTGACGCGATCGCACAGGAATATCTGATGGAGTGCATCATTCAAGTCTTTCCCGACGAGTTTCACTTGCAAACGCTCGATCCGTTTCTCAAGTCGTGCGCTCAGCTGCAGTCGGGCGTGAACGTCAAGTCAATAATCATCTCGCTCATCGACAGACTCGCCGCCTACCACCAACGCAACGAAAAGGCGCACATCGACGCCGCCGACGGTTCAGTGATTCCGATTGACGTGCAGTTGTTTGACGTGTTTAGCATCCAAATCGCAAACATTGTGCAGATCCGAACTGACATGCCGCTCGAGGACACGATTTCGCTGCAGGTCGCTCTCGTGAATCTCGCGCAGAAAGTCTATCCAGATCAAATCGATTACGTCGATAAGGTGCTCGAGACGACGACACAAATATTGGAGAACTTGAACATGTCGAACATCAATCATTCGCTTGCCGTCAATCAGGAGTTGTCGCGATTGCTGCGAGTCTGCATCGACTTCTACAACAACATCTTGACAATTTTGGATTTGAAATTCTTCCCGAAATTGCTCGTGAGATTCGACTATACGTCGCGCAAGTCGCTCGCTCTATATTTGGTGATGAACATCTTGGACAATGAGACGCTCATACCGACGGATGAGCACACTGACGCCGTTCTGGAGATGCTCTCGCCTTTGGTGAAGGACCAAGAAGATCAACCGCCAGATGCCTACGATCCGGAGGATTTCGCAGACGAGCAAGGCATCGTCGGTCGCTTCATCCACCTCCTCAAATCCGATCACCTCGACATGCAATACAAAATTCTCACAGTCGCGAAGAAGCACTTCGCAGCGGGCGGAACGCAGAGAATCAAGCACTGCCTTCCATCGCTCATCTTTCAAGCATTCCAGCTGGCCTACAAGTACAAGGCAATCGCCAGCGAGGACGAAAACTGGGATAAAAAGTGCCAGAAAATCATCCAGTTCTGCCACACCACCATCACATCGATTGCCCGTGCTGAGCTGCCGGACTTAGCACTGAGACTGTTCTTGCAGGGCGCACTGTGCATCGGTCAGATTGGTCAAACCAATTACGAGGCAGTCGCCTACGACTTCATGACGCAAGCCTTCTCCATCTACGAGGATGAGATTTCCGATTCAAAATCACAGTTGGCCGCTATCACGCTCATTATCTCGACAGTGGAGCAAATTACGTGCTTCAGCGAGGAAAATGCGGAGCCGTTGAGAACAAACTGTGCGTTGGCGGCATCGAAGTTGCTGAAAAAGGCTGATCAGTGTCGTGCAGTGGTGGCCTGCGCTAGTCTCTTCTGGAGCGGGAAGAAGGACAACGAGGAGATGAAGGATGAGAAGAGGACGCTCGAGTGCCTGAAAAAGGGCGTGAGGATCGCGTCGCAGTGTCTGGATGTGAACGTACAGGTTCAGCTATATGTCGAGTTGCTCAACAGCTATCTCTACTATTTTGAGAGAGGAAACTCACAAATAACTGTCTCGATGCTGAATCAGCTGATCGGTAAAATTAATGAGGAGCTCCCGAATCTCGAAAAGTCCGAAGAGACGAAGCAAATCGAAAGACATTTCAACAACACGCTGGCACACATTAAGAGTCGTATGGAAACGAATTTGGAAGTGTCATTCGCCGGAATCACAATT
Protein: 815 (aa)
MYMWNTSSSSSGTQRTFNSNPQSPTQLDEQDKLLSDALGVVRNNAILMKRNLDKNRLMDGLKCASTMLGELRTSLLSPKSYYELYMAVTDELRFLEVYLLDEFQKGHKITDLYELVQYAGNIVPRLYLLITVGLVYIKSNPATKKSIMKDLVEMCRGVQNPLRGLFLRNYLLTLRNILPDTPVGKDDDNGNVNDSIDFILTNFAEMNKLWVRMQHQGHSSEKSRREKEREELKILVGTNLVRLSQLDSVNLEIYQKIILPSILEQVVSCRDAIAQEYLMECIIQVFPDEFHLQTLDPFLKSCAQLQSGVNVKSIIISLIDRLAAYHQRNEKAHIDAADGSVIPIDVQLFDVFSIQIANIVQIRTDMPLEDTISLQVALVNLAQKVYPDQIDYVDKVLETTTQILENLNMSNINHSLAVNQELSRLLRVCIDFYNNILTILDLKFFPKLLVRFDYTSRKSLALYLVMNILDNETLIPTDEHTDAVLEMLSPLVKDQEDQPPDAYDPEDFADEQGIVGRFIHLLKSDHLDMQYKILTVAKKHFAAGGTQRIKHCLPSLIFQAFQLAYKYKAIASEDENWDKKCQKIIQFCHTTITSIARAELPDLALRLFLQGALCIGQIGQTNYEAVAYDFMTQAFSIYEDEISDSKSQLAAITLIISTVEQITCFSEENAEPLRTNCALAASKLLKKADQCRAVVACASLFWSGKKDNEEMKDEKRTLECLKKGVRIASQCLDVNVQVQLYVELLNSYLYYFERGNSQITVSMLNQLIGKINEELPNLEKSEETKQIERHFNNTLAHIKSRMETNLEVSFAGITI
| Type | Start | End | Length |
| CDS |
744 |
890 |
147 |
| CDS |
953 |
3190 |
2238 |
| CDS |
3324 |
3383 |
60 |
| intron |
891 |
952 |
62 |
| intron |
3191 |
3323 |
133 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001868892 |
vacuolar sorting protein [Culex quinquefasciatus] gb|EDS27889.1| vacuolar sorting protein [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR005378 |
Vacuolar protein sorting-associated protein 35 |
|
| Pfam |
PF03635.12 |
Vacuolar protein sorting-associated protein 35 |
2.7e-286 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM550160-PA |
| A. mellifera |
GB15658-PA |
| B. mori |
BGIBMGA014194-TA |
| D. plexippus |
DPOGS210180PA |
| N. vitripennis |
NV12450-PA |
| A. gambiae |
AGAP007683 |
| H. melpomene |
HMEL012752-PA |
| T. castaneum |
TC008602 |
| H. sapiens |
ENSP00000299138 |
| D. melanogaster |
FBgn0034708 |
| C. quinquefasciatus |
CPIJ018730 |
| M. musculus |
ENSMUSG00000031696 |
| P. vanderplanki |
Pv.11080 |
| S. invicta |
SI2.2.0_12271 |
| A. aegypti |
AAEL013386 |