MidgeBase gene description page [Pn.10362]
Outline
| Gene ID | Pn.10362 |
| Type | Protein coding gene |
| Scaffold | PnScaf11400 |
| Start | 19707 |
| End | 22412 |
| Direction | - |
Sequence
Transcript: 2262 (bp)
ATGTTCACAGTGCAAAACATAAATCATTCGATACATAATCAGCAAGCAGTCCTGTTTCATTTGTCAAGTTTGACGCCGCGACTAAATAAATCTTGTGGAAAACACAACAAGACAAATTCTAAATCGAAAAAGAGCAATGAACTTGAAACTACCGCTGCTTATATCACATTCAAAGATGATCCACTCGAAATCATTGCAAGAAACTTCAGAGATTCGATTGAGCACAACAACAAAAGATTCACATTCAATTTTAATCTAAAAGGGTCTATTGAAAAGATTTTTGTAAAGTCTTCGGTAACAAATACATGGAGTTCAAAGAATTTACCACAATTTGTCTCTACTGGATCTTTCGATTTGAACAAGAGCACTTCATACTGCAGTGACAGAGAGTTGCCAGCAACACACATTCAGCACAACATTTTGGCAAAAAGTCACGGTTCCAGAAACTTTGAGATAAATCTCTTCAATAATCGTCAGCAGCGAAGAAATTTCAAGACATTTCGCGCGGTGATTGCCGAAAATCAGAGAAACCCGACGCTATTGAGTCGCTTGAAGGAAGCGTACAATCAACCGGCTGGGTCTGTTAAAAGACTGGAGAACTTTAATAATCAAACAGGACAGACGACCAAGCAAACAATCCAGCATGAATCTTTGTCGAAGCTACTTAATCAATTCGAATCAAATCTCACGCCCGAGCAAAAGCAACAACTCAAGGTGGCTTTTGCAGAAGGATATTTGGCCGCGTCACATCCGGAGAATGCCGAGAAAGGTGGTCGAGCAATTAAATACTTAAAGATAATCCAGCAGTTGCTTATGATTATTATCATCACGGCGATTATGGTGAGCCTGTTTACTTCAAACAACGGATCGGTTTTCAGAATTCAACTAGGAAACAATGTCGAAATCGATCCCGAAGACATTTCCGTTTCGTTTGACGACGTAAAAGGATGCGACGAAGCAAAGCAGGAATTGAAGGAAGTCGTCGAATTTCTCAAGAGTCCAGAAAAGTTCAGCAATTTGGGAGGAAAGTTGCCGAAAGGTGTACTGCTTGTCGGACCACCAGGCACGGGAAAAACCTTGCTCGCAAGAGCTGTAGCCGGTGAGGCTGGAGTGCCATTCTTTCACGCAGCCGGTCCAGAGTTCGACGAAGTTCTCGTTGGTCAAGGAGCGAGACGTGTTCGCGATTTGTTCAAAGCAGCAAAAGAGCGAGCTCCTTGTGTGATTTTTATCGATGAAATCGATTCTGTCGGTGCTAAGAGAACCAATTCGGTTTTGCATCCTTATGCAAATCAAACGATCAACCAATTGCTTTCCGAAATGGATGGTTTTCAGCAGAACGAAGGTGTTATTGTCTTGGGAGCAACAAATCGTCGCGAGGATCTGGATCAAGCACTTTTGCGTCCTGGTCGCTTCGATGTAGAAGTAGTGGTTCCAACTCCCGATTATACTGGACGAAAGGAAATCATTACTCATTACCTTGGAAAAATTTTGAGCAGAGACATAAACATTGATGTATTAGCTAGAGGGACGACTGGCTTCACTGGTGCCGACATTGAAAACATGATCAATCAAGCCGCTCTCAAAGCAGCAATTGAGGGTGCCGAAGTTGTCTCAATGCGCCACCTTGAAAACGCACGCGACAAGGTTCTCATGGGACCCGAGAGGAAGGCAAGACTCCCAGACGAAGAAGCGAATAAAATTACTGCGTATCATGAGGGAGGACATGCGATAGTGGCCTACTACACGAAGGAATCGCATCCCCTTCATAAAGTTACGATTATGCCACGAGGTCCTTCACTCGGTCACACAGCATATATTCCCGAAAAGGAGCGCTATCATGTGACTAAAACGCAACTGTTGGCAATGATGGACACAATGTTGGGTGGTCGTGCTGCGGAGGAGTTGATATTTGGAGCAGACAAAATAACGTCGGGTGCGAGCAGTGATCTGAAACAAGCTACGTCAATTGCCTCACACATGGTCAAAGATTGGGGAATGTCGGAGAAAGTTGGACTTCGCACAATTGAATCGGCAAAGGGCTTGCAGGCATCTGAAAATCTTTCTTCAACAACAATCGAATCGGTTGACTTTGAAATAAAGAAAATTTTAAGTGACAGTTACGAACGTGCAAAGAGCATCTTGAAGGCTCATTCAAAAGAGCACAAGGCTCTTGCAGAAGCACTACTTAAATACGAGACACTAGACGCTGAGGACATTAAGGCTATTCTCTCGGGGGATAAAATTTCCCCGGATTCTTCACAC
Protein: 754 (aa)
MFTVQNINHSIHNQQAVLFHLSSLTPRLNKSCGKHNKTNSKSKKSNELETTAAYITFKDDPLEIIARNFRDSIEHNNKRFTFNFNLKGSIEKIFVKSSVTNTWSSKNLPQFVSTGSFDLNKSTSYCSDRELPATHIQHNILAKSHGSRNFEINLFNNRQQRRNFKTFRAVIAENQRNPTLLSRLKEAYNQPAGSVKRLENFNNQTGQTTKQTIQHESLSKLLNQFESNLTPEQKQQLKVAFAEGYLAASHPENAEKGGRAIKYLKIIQQLLMIIIITAIMVSLFTSNNGSVFRIQLGNNVEIDPEDISVSFDDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRREDLDQALLRPGRFDVEVVVPTPDYTGRKEIITHYLGKILSRDINIDVLARGTTGFTGADIENMINQAALKAAIEGAEVVSMRHLENARDKVLMGPERKARLPDEEANKITAYHEGGHAIVAYYTKESHPLHKVTIMPRGPSLGHTAYIPEKERYHVTKTQLLAMMDTMLGGRAAEELIFGADKITSGASSDLKQATSIASHMVKDWGMSEKVGLRTIESAKGLQASENLSSTTIESVDFEIKKILSDSYERAKSILKAHSKEHKALAEALLKYETLDAEDIKAILSGDKISPDSSH
| Type | Start | End | Length |
| CDS |
19710 |
19889 |
180 |
| CDS |
19980 |
20869 |
890 |
| CDS |
20957 |
21085 |
129 |
| CDS |
21150 |
21334 |
185 |
| CDS |
21433 |
22268 |
836 |
| CDS |
22371 |
22412 |
42 |
| intron |
19890 |
19979 |
90 |
| intron |
20870 |
20956 |
87 |
| intron |
21086 |
21149 |
64 |
| intron |
21335 |
21432 |
98 |
| intron |
22269 |
22370 |
102 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR22519 |
hypothetical protein AND_15087 [Anopheles darlingi] |
0.0 |
| InterPro |
IPR005936 |
Peptidase, FtsH |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003959 |
ATPase, AAA-type, core |
|
| InterPro |
IPR003960 |
ATPase, AAA-type, conserved site |
|
| InterPro |
IPR000642 |
Peptidase M41 |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(BP) |
GO:0030163 |
protein catabolic process |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004222 |
metalloendopeptidase activity |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Pfam |
PF13207.1 |
AAA domain |
9.1e-05 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
6.4e-08 |
| Pfam |
PF13481.1 |
AAA domain |
0.00086 |
| Pfam |
PF06414.7 |
Zeta toxin |
0.0049 |
| Pfam |
PF06068.8 |
TIP49 C-terminus |
0.0014 |
| Pfam |
PF01695.12 |
IstB-like ATP binding protein |
0.0022 |
| Pfam |
PF13245.1 |
Part of AAA domain |
0.00098 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
3.4e-05 |
| Pfam |
PF13401.1 |
AAA domain |
1.2e-05 |
| Pfam |
PF13521.1 |
AAA domain |
0.0043 |
| Pfam |
PF13671.1 |
AAA domain |
0.00022 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.033 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
0.0061 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
2.7e-43 |
| Pfam |
PF13238.1 |
AAA domain |
0.025 |
| Pfam |
PF07813.7 |
LTXXQ motif family protein |
0.003 |
| Pfam |
PF13173.1 |
AAA domain |
0.001 |
| Pfam |
PF05496.7 |
Holliday junction DNA helicase ruvB N-terminus |
9.5e-06 |
| Pfam |
PF01434.13 |
Peptidase family M41 |
9.5e-77 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ002647 |
| S. invicta |
SI2.2.0_13651 |
| N. vitripennis |
NV11235-PA |
| H. sapiens |
ENSP00000318480 |
| H. sapiens |
ENSP00000379590 |
| H. sapiens |
ENSP00000365139 |
| T. castaneum |
TC009202 |
| P. humanus |
PHUM279900-PA |
| M. musculus |
ENSMUSG00000026775 |
| D. plexippus |
DPOGS214561PA |
| H. sapiens |
ENSP00000398713 |
| P. humanus |
PHUM263910-PA |
| H. melpomene |
HMEL016113-PA |
| P. vanderplanki |
Pv.06154 |
| P. humanus |
PHUM279890-PA |
| D. melanogaster |
FBgn0034792 |
| A. gambiae |
AGAP009973 |
| A. aegypti |
AAEL010241 |
| H. sapiens |
ENSP00000365184 |
| A. mellifera |
GB19161-PA |