MidgeBase gene description page [Pn.10351]
Outline
| Gene ID | Pn.10351 |
| Type | Protein coding gene |
| Scaffold | PnScaf11386 |
| Start | 135 |
| End | 2451 |
| Direction | - |
Sequence
Transcript: 1143 (bp)
ATGTGTGGCTCATCGGACGACGCACTCAAAACTCGACAGCACGAGCTGATCCTGTTTAATGTCACATACGAAAATTACAAAATTAGTTATAGTTTTATGGTCAAAGTCGTCAAATTTAGCTACATGTGGACGATAAACAATTTCAGTTTTTGTCGGGAAGAGATGGGCGAAGTATTAAAGTCATCGACATTCTCAGCGGGTGCAAACGATAAACTTAAATGGTGTTTGCGCGTCAACCCGAAGGGACTCGATGAGGAAAGCAAAGACTATCTTTCCCTCTATTTGCTTCTTGTCTCCTGCAACAAATCGGAAGTGCGAGCCAAATTCAAATTCTCAATATTGAACGCGAAACGCGAAGAGACCAAAGCAATGGAGTCGCAACGTGCATATCGTTTCGTTCAAGGAAAGGATTGGGGCTTCAAGAAGTTCATTCGTCGCGATTTTCTCCTGGACGAGGCAAACGGTCTTTTGCCCGAGGACAAATTAACAATTTTCTGTGAGGTCAGTGTTGTGGCTGACAGTGTTAATATATCAGGACAAAGTAACATAATCCAATTCAAAGTGCCAGAATGTAAACTGTCTGAGGATTTGGGCAATTTATTTGATAATGAGAAATTTAGTGATGTAACATTGTCGGTGGGCGGACGAGAATTTCAGGCGCATAAGGCAATTCTTGCAGCACGAAGTCCCGTCTTTGCCGCAATGTTCGAGCACGAAATGGAGGAGCGGAAACAAAATCGCGTCGCTATCACCGATGTGGATCATGAAGTACTCAAAGAAATGCTGCGATTTATATACACTGGAAAGGCACCGAATTTGGAGAAAATGGCCGACGATTTGCTGGCAGCCGCCGATAAGTATGCCCTGGAAAAGCTTAAAGTGATGTGCGAGGAGGCGTTGTGTGTAAACCTGTCAGTTGAGACGGCTGCTGAAACGCTCATACTTGCAGACTTGCACAGTGCCGACCAGCTGAAAGCGCAAACAATCGATTTCATTAACACTCATGCAACAGACGTGATGGAAACAGTTGGATGGAAAAACATGGTAACAACACATCCGCACCTAATAAATGAGGCATTTCGCGCACTAGCTACTCAACAAATACCACCTATCGGTCCACCGCGGAAGCGCGTCAAGATGAGC
Protein: 381 (aa)
MCGSSDDALKTRQHELILFNVTYENYKISYSFMVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIIQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAARSPVFAAMFEHEMEERKQNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETVGWKNMVTTHPHLINEAFRALATQQIPPIGPPRKRVKMS
| Type | Start | End | Length |
| CDS |
138 |
279 |
142 |
| CDS |
439 |
581 |
143 |
| CDS |
678 |
856 |
179 |
| CDS |
944 |
1121 |
178 |
| CDS |
1759 |
2038 |
280 |
| CDS |
2118 |
2239 |
122 |
| CDS |
2353 |
2451 |
99 |
| intron |
280 |
438 |
159 |
| intron |
582 |
677 |
96 |
| intron |
857 |
943 |
87 |
| intron |
1122 |
1758 |
637 |
| intron |
2039 |
2117 |
79 |
| intron |
2240 |
2352 |
113 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001847244 |
roadkill [Culex quinquefasciatus] gb|EDS25818.1| roadkill [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR008974 |
TRAF-like |
|
| InterPro |
IPR002083 |
MATH |
|
| InterPro |
IPR013069 |
BTB/POZ |
|
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR000210 |
BTB/POZ-like |
|
| InterPro |
IPR013322 |
TRAF-type |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF02214.17 |
K+ channel tetramerisation domain |
0.002 |
| Pfam |
PF07707.10 |
BTB And C-terminal Kelch |
0.0084 |
| Pfam |
PF00651.26 |
BTB/POZ domain |
2.1e-34 |
| Pfam |
PF00917.21 |
MATH domain |
2.5e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ005760 |
| H. sapiens |
ENSP00000426986 |
| N. vitripennis |
NV15499-PA |
| T. castaneum |
TC000632 |
| D. melanogaster |
FBgn0264493 |
| A. mellifera |
GB17428-PA |
| M. musculus |
ENSMUSG00000057522 |
| H. sapiens |
ENSP00000425905 |
| P. vanderplanki |
Pv.17464 |
| H. sapiens |
ENSP00000420908 |
| D. plexippus |
DPOGS201231PA |
| H. sapiens |
ENSP00000377001 |
| A. gambiae |
AGAP003428 |
| P. humanus |
PHUM522980-PA |
| A. aegypti |
AAEL005512 |
| H. sapiens |
ENSP00000280098 |
| H. sapiens |
ENSP00000240327 |
| H. sapiens |
ENSP00000420960 |
| M. musculus |
ENSMUSG00000026771 |
| B. mori |
BGIBMGA012495-TA |
| S. invicta |
SI2.2.0_80191 |
| H. melpomene |
HMEL005347-PA |
| H. sapiens |
ENSP00000377004 |