MidgeBase gene description page [Pn.10328]
Outline
| Gene ID | Pn.10328 |
| Type | Protein coding gene |
| Scaffold | PnScaf11268 |
| Start | 3923 |
| End | 9242 |
| Direction | - |
Sequence
Transcript: 546 (bp)
ATGAGCAATTTTTCCGCCGCCTCCGATCGACTCTCGCTGCTCGCGGCCATTCCTTGCCGCCAAATCCTCCTCGCCTGTTGTCGCCATCATCCTCAGGCGCGTCCCGCGCTGACGACTCTCAATGACGATCGTCAAGGCTCGCAGAGCGGAGTGATTTCGCCGACGTCGTCGAACTCGTCGCAGCACACGAGCACGCCGCTCCGCATGCCGGCTCCGTCGGCGGCGGGCATCAACGAGCCGCAGGAGTGTCCCTACTGCCGCCGGACGTTCTCGTGCTACTACTCGCTGAAGCGGCACTTCCAGGACAAGCACGAGCAGTCGGACACGCTTTACGTGTGCGAGTTCTGCCACCGGCGCTACCGCACCAAGAACTCGCTCACGACGCACAAGAGCCTCCAGCACCGCGGCTCCAGCGGCATGCTCAAGCGCCTGCTCAAGACCTCCGCCATCAAGAACGTGCTGGGGCCGCACGTGCCGCCACACACCCGGCCGCACCTCTTCGACTTCGCCGCCGAACTCGGCCAGCCGCCGCCCGGCATCCCCCAA
Protein: 182 (aa)
MSNFSAASDRLSLLAAIPCRQILLACCRHHPQARPALTTLNDDRQGSQSGVISPTSSNSSQHTSTPLRMPAPSAAGINEPQECPYCRRTFSCYYSLKRHFQDKHEQSDTLYVCEFCHRRYRTKNSLTTHKSLQHRGSSGMLKRLLKTSAIKNVLGPHVPPHTRPHLFDFAAELGQPPPGIPQ
| Type | Start | End | Length |
| CDS |
3926 |
4335 |
410 |
| CDS |
9107 |
9242 |
136 |
| intron |
4336 |
9106 |
4771 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAS80328 |
broad complex isoform Z3 [Aedes aegypti] |
4e-56 |
| InterPro |
IPR015880 |
Zinc finger, C2H2-like |
|
| InterPro |
IPR007087 |
Zinc finger, C2H2 |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF11672.3 |
Protein of unknown function (DUF3268) |
0.093 |
| Pfam |
PF13894.1 |
C2H2-type zinc finger |
1.1e-05 |
| Pfam |
PF13912.1 |
C2H2-type zinc finger |
0.034 |
| Pfam |
PF12756.2 |
C2H2 type zinc-finger (2 copies) |
0.21 |
| Pfam |
PF00096.21 |
Zinc finger, C2H2 type |
0.0015 |
| Pfam |
PF02892.10 |
BED zinc finger |
0.11 |
| Pfam |
PF12874.2 |
Zinc-finger of C2H2 type |
1.1 |
| Pfam |
PF13913.1 |
zinc-finger of a C2HC-type |
0.064 |
| Pfam |
PF14455.1 |
Predicted metal binding domain |
0.048 |
| Pfam |
PF12171.3 |
Zinc-finger double-stranded RNA-binding |
0.022 |
| Pfam |
PF09706.5 |
CRISPR-associated protein (Cas_CXXC_CXXC) |
0.023 |
| Pfam |
PF12907.2 |
Zinc-binding |
0.0015 |
| Pfam |
PF13465.1 |
Zinc-finger double domain |
0.00037 |
| Pfam |
PF02591.10 |
Putative zinc ribbon domain |
0.06 |
| Pfam |
PF10276.4 |
Zinc-finger domain |
0.078 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06470 |
| T. castaneum |
TC005476 |
| A. gambiae |
AGAP002163 |
| S. invicta |
SI2.2.0_08987 |
| D. plexippus |
DPOGS207437PA |
| N. vitripennis |
NV15003-PA |
| A. mellifera |
GB18338-PA |
| C. quinquefasciatus |
CPIJ003271 |
| B. mori |
BGIBMGA009909-TA |
| H. melpomene |
HMEL012334-PA |