MidgeBase gene description page [Pn.10306]
Outline
| Gene ID | Pn.10306 |
| Type | Protein coding gene |
| Scaffold | PnScaf11245 |
| Start | 268 |
| End | 2097 |
| Direction | - |
Sequence
Transcript: 1641 (bp)
ATGAAGCGCAATCTCCGACTTTTTTTCATCTTCTCGGCGCTCTTGGCCTTCGTGTCGTCGCAGCAAGTGGTCGAGGTCGACGACAGCTGGTTTCCGCTGAGCATCATCCACATCAATGACTTCCATGCGAGGTTCGAGGAGACGAATGATCGATCGAACGACTGCAGGCGTGGCGAGGAGGTGTGTATCGGTGGGTATGCACGTGTCGTGACGACCGTTAAGGAGCTTTTGGCGACGCGCGAGAACCCAATCTACCTCAACGCGGGCGACAACTTCCAGGGCACGCTCTGGTACAACATCGGCCGCTGGAACGTCACCAATCAGTTCCTCAACATGCTGCCGGCCGACGCGCAGACAATCGGCAACCACGAGTTCGACCATGGCGTCGAGGGCATCGTGCCGTTTCTCGAGCGCACGCTCACCCCGGTGGTGATCGCCAATGTCGACGACAGCGGCGAGCCGACTTTCCAAGGCAAGTACAACAAGTCGATCGTGATTGAGAGGAGCGGCCGGAGAATCGGCATCATCGGCGCCATTCTGAGGACGACCAACAACATCGCCAAGACCGGCAACATCCGGTTCTACAACGAGGCCGAGAAGGTGCGCGAGGAGGCCGAGAGGCTGAAGAACGAGGGAGTCGACATCATCGTTGTGGTGTCGCACTGCGGCCTCGACCGCGACAGAGAAATTGCGCGCGACGGCGGTCCGAACATTGACATCATAGTGGGCGGACACAGCCACTCGTTTCTCTGGAACGGCACGGATTTCCCGGCTCTCGACAGACCGGCAGCCTCGTATCCGGTTGTGGTGGAGCAAGAGAACGGCCATCGTGTGCTCATCGTGCAGGCCTCCGCATACACGAAATACGTCGGCGACATCACGCTCTACTTCGACAGCGAGGGCGTCGTGCAGGCGTGGGAGGGAAATCCCATCTACATGAGCGCCGACGTGGTTCAGGACGCGGAGGTGATGCGCGCACTCGAGCCGTGGCGCGAAATCGTCAACAGAGAGGGCGAGCGCGTCGTCGGCCACGTGCGCTTCACTGTCGCGAGTGCCGGGTGCTACGCGGGCGACTGCCTCATGGGCAACTTGCAGGCCGACGCCATGGCCTACTCCGCCTTCCTCGAGGAGGACGAGGACGACGCATGGACGTACGCAACCATCGCGCTCACCAATGCGGGCGGCGTGCGTGGCTCGCTGACTCGCGGCGATCTCACCTACAGCAACCTCGTCACGACCACGCCCTTCGAGAACACCTGCGACCGCATCGAGGTGCAGGGCAAGTACATCCGGCAGGCGCTCGAACAGACCGTCCGCTTCGACAGCCCGAGCATCCTGCAGACGTCGGGCATTCGGGTCGTCTTCAACATGACCAATGCGCCCTTCAGTCGCGTGCAGTCGCTGAAGGTTCTCTGCCGACTGTGCGCCGTTCCGCGCTACGAGGACATCGACGACGAGACCTTCTATCGCGTCATCGTCAACAACTTTCTGTTCGAGAATGGCGACAATTTTGCGATGCTCCGCGACAACCGCCGCAACCACCAGGTCGGCCCCGTCGACATCGATGCCCTCGCCGTTTACGTCGAGAAGAACTCGCCGATCACGATGCTGCCGCCGCGCGGTCGCGTGACCATCGTTAGA
Protein: 547 (aa)
MKRNLRLFFIFSALLAFVSSQQVVEVDDSWFPLSIIHINDFHARFEETNDRSNDCRRGEEVCIGGYARVVTTVKELLATRENPIYLNAGDNFQGTLWYNIGRWNVTNQFLNMLPADAQTIGNHEFDHGVEGIVPFLERTLTPVVIANVDDSGEPTFQGKYNKSIVIERSGRRIGIIGAILRTTNNIAKTGNIRFYNEAEKVREEAERLKNEGVDIIVVVSHCGLDRDREIARDGGPNIDIIVGGHSHSFLWNGTDFPALDRPAASYPVVVEQENGHRVLIVQASAYTKYVGDITLYFDSEGVVQAWEGNPIYMSADVVQDAEVMRALEPWREIVNREGERVVGHVRFTVASAGCYAGDCLMGNLQADAMAYSAFLEEDEDDAWTYATIALTNAGGVRGSLTRGDLTYSNLVTTTPFENTCDRIEVQGKYIRQALEQTVRFDSPSILQTSGIRVVFNMTNAPFSRVQSLKVLCRLCAVPRYEDIDDETFYRVIVNNFLFENGDNFAMLRDNRRNHQVGPVDIDALAVYVEKNSPITMLPPRGRVTIVR
| Type | Start | End | Length |
| CDS |
271 |
1196 |
926 |
| CDS |
1306 |
1889 |
584 |
| CDS |
1967 |
2097 |
131 |
| intron |
1197 |
1305 |
109 |
| intron |
1890 |
1966 |
77 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR23590 |
hypothetical protein AND_12620 [Anopheles darlingi] |
1e-158 |
| InterPro |
IPR004843 |
Metallophosphoesterase domain |
|
| InterPro |
IPR006146 |
5'-Nucleotidase, conserved site |
|
| InterPro |
IPR008334 |
5'-Nucleotidase, C-terminal |
|
| InterPro |
IPR006179 |
5'-Nucleotidase/apyrase |
|
| Gene Ontology(BP) |
GO:0009166 |
nucleotide catabolic process |
|
| Gene Ontology(MF) |
GO:0046872 |
metal ion binding |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016788 |
hydrolase activity, acting on ester bonds |
|
| Pfam |
PF13277.1 |
YmdB-like protein |
0.0078 |
| Pfam |
PF02872.13 |
5'-nucleotidase, C-terminal domain |
9.7e-33 |
| Pfam |
PF09587.5 |
Bacterial capsule synthesis protein PGA_cap |
2.7e-05 |
| Pfam |
PF00149.23 |
Calcineurin-like phosphoesterase |
1.1e-17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.01277 |
| Pn.14415 |
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0259101 |
| A. gambiae |
AGAP001601 |
| A. aegypti |
AAEL000575 |
| A. mellifera |
GB12259-PA |
| A. gambiae |
AGAP001600 |
| P. vanderplanki |
Pv.12969 |
| A. aegypti |
AAEL011346 |
| B. mori |
BGIBMGA012871-TA |
| H. melpomene |
HMEL015627-PA |
| D. plexippus |
DPOGS209775PA |
| T. castaneum |
TC000799 |
| A. gambiae |
AGAP007140 |
| D. plexippus |
DPOGS206914PA |
| C. quinquefasciatus |
CPIJ800110 |
| N. vitripennis |
NV10586-PA |
| S. invicta |
SI2.2.0_01916 |
| P. vanderplanki |
Pv.09279 |
| T. castaneum |
TC000800 |
| T. castaneum |
TC000798 |
| D. plexippus |
DPOGS201628PA |
| B. mori |
BGIBMGA010290-TA |
| A. aegypti |
AAEL009970 |
| A. aegypti |
AAEL011341 |
| A. gambiae |
AGAP007139 |
| C. quinquefasciatus |
CPIJ007316 |
| B. mori |
BGIBMGA010291-TA |
| D. plexippus |
DPOGS209774PA |
| C. quinquefasciatus |
CPIJ018313 |
| P. vanderplanki |
Pv.09782 |