MidgeBase gene description page [Pn.10262]
Outline
| Gene ID | Pn.10262 |
| Type | Protein coding gene |
| Scaffold | PnScaf11147 |
| Start | 2838 |
| End | 3702 |
| Direction | - |
Sequence
Transcript: 801 (bp)
ATGCTTTTAAACAGCCCAGGACAAGGATTAATGAGGATTGTGGCCAATAATTTAGCGAGAAAATGTTTTTCATCGTCCGCCGCAACATCGCCAGCTTTAGAAATTGAACCAAGAAACGTAGAAGTTCCCACAAAAATCAGTCGCATCAATCCACTCTCTCATCCCGACTACTTTGGAGTCAGCAAGCTTTTTACAGTTCGCGATTTGCTGGAAGCGCGAGTTCATTTCGGCCACAAGGATGGATCTCTGAATGAACGAATGGCGCCCTACCTTTTTGGCTCGAGACTGGGACACACGATTTTCGATCTTGACCAAACGGCGGAACACTTGACGAGAGCTTTGAACGTAGCAGCTCACACAGCCCTGCAAGGCGGCCTCATTCTCTTCTTTTGTCGCAGCGCAATCAATGCACACACAGTCGAGAAAACGGCAAAGGAGTGCGGCGAGTTTGCACACACGAGATACTGGAGAGGAGGAACTTTCACCAACTCGAATGTGCAATTCAAAGCCGTCACTCGACTGCCCGACTTATGCATCTTCCTCAGCACACTTAACAATGTCATGCTGCAACACACGGCGGTTCGTGACGCTGCCAAAATGAATATTCCTTCGATCGGTATTGTGGACAGCAATTGCTCGCCGGACTTGATCAATTATCTCGTTCCCGGAAACGACGACTCGCCAGCTTCGATCGAGCTCTACTGTCGCGTCTTCAAGGAGGCAATTCTGAGGGGAAAGGAGAAGAGGAAAGAACTGTTGGCGGAGATTCAGAAGATGGAAGCGGAACAGGAGCAAAATTCT
Protein: 267 (aa)
MLLNSPGQGLMRIVANNLARKCFSSSAATSPALEIEPRNVEVPTKISRINPLSHPDYFGVSKLFTVRDLLEARVHFGHKDGSLNERMAPYLFGSRLGHTIFDLDQTAEHLTRALNVAAHTALQGGLILFFCRSAINAHTVEKTAKECGEFAHTRYWRGGTFTNSNVQFKAVTRLPDLCIFLSTLNNVMLQHTAVRDAAKMNIPSIGIVDSNCSPDLINYLVPGNDDSPASIELYCRVFKEAILRGKEKRKELLAEIQKMEAEQEQNS
| Type | Start | End | Length |
| CDS |
2841 |
3622 |
782 |
| CDS |
3684 |
3702 |
19 |
| intron |
3623 |
3683 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002003810 |
GI21009 [Drosophila mojavensis] gb|EDW13252.1| GI21009 [Drosophila mojavensis] |
4e-89 |
| InterPro |
IPR001865 |
Ribosomal protein S2 |
|
| InterPro |
IPR023591 |
Ribosomal protein S2, flavodoxin-like domain |
|
| InterPro |
IPR018130 |
Ribosomal protein S2, conserved site |
|
| InterPro |
IPR005706 |
Ribosomal protein S2, bacteria/mitochondria/plastid |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(CC) |
GO:0015935 |
small ribosomal subunit |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00318.15 |
Ribosomal protein S2 |
7.6e-47 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000400082 |
| C. quinquefasciatus |
CPIJ013588 |
| A. aegypti |
AAEL008582 |
| P. vanderplanki |
Pv.01938 |
| P. humanus |
PHUM490950-PA |
| A. gambiae |
AGAP011886 |
| H. sapiens |
ENSP00000360850 |
| N. vitripennis |
NV10668-PA |
| H. melpomene |
HMEL012310-PA |
| S. invicta |
SI2.2.0_06769 |
| H. sapiens |
ENSP00000241600 |
| D. melanogaster |
FBgn0031639 |
| A. mellifera |
GB10162-PA |
| B. mori |
BGIBMGA008335-TA |
| D. plexippus |
DPOGS206624PA |
| M. musculus |
ENSMUSG00000035772 |
| T. castaneum |
TC002780 |