MidgeBase gene description page [Pn.10167]
Outline
| Gene ID | Pn.10167 |
| Type | Protein coding gene |
| Scaffold | PnScaf10926 |
| Start | 237 |
| End | 2264 |
| Direction | + |
Sequence
Transcript: 1740 (bp)
ATGATAACTGTGCAAATAGTGCCATACATTTTCTTGTGCCTCACTCTGAAGTTGGCAAATTGTCAAGTGATGGAGAGAAAACCCAACATTGTGATCATTTTCGCCGACGACCTTGGTTTTTCGGACGTCAGTTTTCATGGCAGCTCAGAAATTCCAACACCAAACATCGATGCACTTTGCTACAACGGCGTAATTCTCAACAGAATGTACACGACGCCACTTTGTACACCTTCTCGAAGCTCACTGATGACGGGAAAATATAGTACAAAGCTAGGCATGCAACATTTTGTCATTCCGAGCGACGAACCTTGGGGACTGCCTTTGAATGAAAAAATAATGCCGGAATATTTCCGCGATGCTGGCTACAAGACGGCCCTCGTTGGAAAATGGCACTTGGGATTTTACGAGAGAGCTTTCACGCCTACAATGCGCGGATTCGATCATCATTTCGGCTACTTGGGGCCTTACATCGGCTACTTCGATCATAGTCTCATCATGCTTGACAGGAACTATTCGCGTGGCTATGACATGCGTAGGAATTTGGATGTCGTGGATGGAAAAGGAAAATATGCGACAGACTTATTCACTGATGAAGCTGTTAATCTAATTAAAGAGCATGACGCAAACAAACCTCTGTTTATGCTTTTGTCACACTTGGCTCCACACACAGGCAACGAAGATAAGCCGCTCGAAGCACCCGAACGTAATATAGGCAAATTTTCTCACATCAAAAGTGAGAAAAGAAGAACACTAGCGGCTATGATAGACGTATTAGATGAGGGAATCGGTAAGGTGGTAGAGGCTCTAAACGAAAAGGGCTTAATGAACAATACGGTAATATTTTTTCTTTCTGATAATGGAGGCCCGACCATTGGACTGCATTCTACCATGGCTTCAAATTATCCTCTGAGAGGTCAAAAAGGCGGTGTATGGGAGGGCGGTGTTCGCGTGCCGGCATGCATGTATCATTCGTCGATCGGCGGAGATGCTAGAATATCGAATGAGTTTATGCACATCACCGACCTGTTGCCAACAATGGCTTCGATGGCCAACATTTCGATCGATGTCAAAAATATTGATGGCATCGATCAGAGGGAAATGATTTTAAAAAGAAAACCGACAACGAGACGTGACATTCTCTACAACATTGAATCGGTTTTTGGGTTTAGCGCAATAATGAGTGACAATTGGAAGCTGGTTAACGGCACTGAAAATATAAAATATTCAGGATGGCTCGGAAGTGTAGAAAACTATTATCATATGAACAATGAGACGTATTTTCAAGCGGTTGCTAATTCGAGAGCCTCAAGAAATTTTCCTTCTCTCTCAATGGAAAATGTTGCAGAACTGAGAGACAACGCAACAGTTAGATGCCCGAATGACATCCCAACAACAAAATGCAACCCTTTGGAATCGCCATGTCTTTTCAACGTTGTGGACGATCCCTGCGAAATGAATAATCTCGCTCAAAACAATCCAGAGATTGTCAAAATGCTTCTCAAAAAATTGGAGAAGCAAATATTGATGATGAAGCCCTCAATTCGTAAAGAACCGGATCCACTGTGCGATCCAAAATTGCACAATGACACATGGACATGGTGGAAAGAAAATGATGATAAAACATCCGAATGGAATACTGTTTTAGTGGCTTTATGCATCATTTGTATAATCGGCTCCATCTTCCTTTGCTTCATAAAATGTAAAAAAATTATGCAAAAGATGCACAATGTAAAAGCTTTT
Protein: 580 (aa)
MITVQIVPYIFLCLTLKLANCQVMERKPNIVIIFADDLGFSDVSFHGSSEIPTPNIDALCYNGVILNRMYTTPLCTPSRSSLMTGKYSTKLGMQHFVIPSDEPWGLPLNEKIMPEYFRDAGYKTALVGKWHLGFYERAFTPTMRGFDHHFGYLGPYIGYFDHSLIMLDRNYSRGYDMRRNLDVVDGKGKYATDLFTDEAVNLIKEHDANKPLFMLLSHLAPHTGNEDKPLEAPERNIGKFSHIKSEKRRTLAAMIDVLDEGIGKVVEALNEKGLMNNTVIFFLSDNGGPTIGLHSTMASNYPLRGQKGGVWEGGVRVPACMYHSSIGGDARISNEFMHITDLLPTMASMANISIDVKNIDGIDQREMILKRKPTTRRDILYNIESVFGFSAIMSDNWKLVNGTENIKYSGWLGSVENYYHMNNETYFQAVANSRASRNFPSLSMENVAELRDNATVRCPNDIPTTKCNPLESPCLFNVVDDPCEMNNLAQNNPEIVKMLLKKLEKQILMMKPSIRKEPDPLCDPKLHNDTWTWWKENDDKTSEWNTVLVALCIICIIGSIFLCFIKCKKIMQKMHNVKAF
| Type | Start | End | Length |
| CDS |
237 |
439 |
203 |
| CDS |
504 |
574 |
71 |
| CDS |
647 |
1225 |
579 |
| CDS |
1294 |
1351 |
58 |
| CDS |
1433 |
2261 |
829 |
| intron |
440 |
503 |
64 |
| intron |
575 |
646 |
72 |
| intron |
1226 |
1293 |
68 |
| intron |
1352 |
1432 |
81 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848165 |
arylsulfatase B [Culex quinquefasciatus] gb|EDS27759.1| arylsulfatase B [Culex quinquefasciatus] |
1e-154 |
| InterPro |
IPR017849 |
Alkaline phosphatase-like, alpha/beta/alpha |
|
| InterPro |
IPR024607 |
Sulfatase, conserved site |
|
| InterPro |
IPR000917 |
Sulfatase |
|
| InterPro |
IPR017850 |
Alkaline-phosphatase-like, core domain |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0008484 |
sulfuric ester hydrolase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF01663.17 |
Type I phosphodiesterase / nucleotide pyrophosphatase |
3.5e-08 |
| Pfam |
PF02995.12 |
Protein of unknown function (DUF229) |
0.0045 |
| Pfam |
PF00884.18 |
Sulfatase |
6e-70 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.11456 |
| Pn.14363 |
| Pn.12600 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06199 |
| P. humanus |
PHUM604070-PA |
| A. aegypti |
AAEL017192 |
| A. mellifera |
GB13235-PA |
| T. castaneum |
TC007966 |
| H. sapiens |
ENSP00000438836 |
| D. melanogaster |
FBgn0036768 |
| P. humanus |
PHUM616230-PA |
| D. melanogaster |
FBgn0033763 |
| C. quinquefasciatus |
CPIJ011047 |
| M. musculus |
ENSMUSG00000036412 |
| A. gambiae |
AGAP011347 |
| M. musculus |
ENSMUSG00000046561 |
| H. sapiens |
ENSP00000320219 |
| P. humanus |
PHUM616890-PA |
| C. quinquefasciatus |
CPIJ006774 |
| T. castaneum |
TC008439 |
| N. vitripennis |
NV11508-PA |
| H. sapiens |
ENSP00000264914 |
| A. gambiae |
AGAP011348 |
| H. sapiens |
ENSP00000379455 |
| A. aegypti |
AAEL003960 |
| H. sapiens |
ENSP00000333395 |
| P. vanderplanki |
Pv.03971 |
| B. mori |
BGIBMGA001098-TA |
| P. vanderplanki |
Pv.00675 |
| H. sapiens |
ENSP00000426879 |
| C. quinquefasciatus |
CPIJ006775 |
| A. aegypti |
AAEL005134 |
| P. humanus |
PHUM570670-PA |
| H. sapiens |
ENSP00000456339 |
| D. melanogaster |
FBgn0036765 |
| T. castaneum |
TC007349 |
| A. mellifera |
GB13184-PA |
| N. vitripennis |
NV15600-PA |
| D. plexippus |
DPOGS211903PA |
| P. vanderplanki |
Pv.01785 |
| D. melanogaster |
FBgn0052191 |
| M. musculus |
ENSMUSG00000042082 |
| A. gambiae |
AGAP012047 |
| S. invicta |
SI2.2.0_10198 |
| H. melpomene |
HMEL017720-PA |