MidgeBase gene description page [Pn.10096]
Outline
| Gene ID | Pn.10096 |
| Type | Protein coding gene |
| Scaffold | PnScaf10717 |
| Start | 3841 |
| End | 4926 |
| Direction | + |
Sequence
Transcript: 867 (bp)
ATGCAGATCGCAGCCCTAAAGCTCCTCTTTTTCGTCTCGGCGGCGTCGGCGGCCGCGATTTACCCGAAAATCGACCTCGCGCACATCACGCCGTACCGGCTGGTGCCCGAGTTTGCGCGCCACCATCAGCCGCAGGAATCGAGGCAGCGCGGCCGAATTGTGGGCGGCGAGGTGGTCGTTCCCAACAGCTTTCCCTTCCACACGGCCATTCTGCTCGTTCTGCGTTCGGGACGCGTCACCCTGTGCGGCGGCACCCTGCTCAGTCCGGTGCGGACGCTGACTGCTGCGCACTGTGTGGCGACCATCGTCGGCACGACCGTCATCGTCGGCGGGCACAACATTGACGAGCTGGAGGAGACGCAGCAGCGAGTGGATGTGCCGCCCAGTCACTTCAGGATCCATCCCGATTACAACGAATTTTTCCACAACGACATCGCCATCTTGCTGCACCCAACGAGCCTCACGCTCAACACCTACGTCCAGCCAACTCGACTGCCGACGCTCCAAAAGCGAGAGGACTTCATCGGCGAGACTGCGACCATAATTGGCCACGGCATGACTGGCGACGGCACGATGCCGACGCCGATTCTTCGTAAGTCCAGCAACGTGATTGTGCCGAATGCCGAGTGCGAGAATGCCTTCGGCACAGCCTTCGTTCCTCCGACGGTCATTTGCATGTCGACAGTTGGCAAGCGCGGCATCTGCTCCTCGGACTCGGGCGGCAGTCTGCTCGTTCACCGCGACGGCCTCGACAAGCGTCCGATTCAGATCGGCGTGTCCAGTTACGGGGGCGGCTGCGAGTCTGAGCTGCCGAACGGCTTCACGAGAGTCACCGACTTTCTCGAGTGGATCGACGACACGCAGACG
Protein: 289 (aa)
MQIAALKLLFFVSAASAAAIYPKIDLAHITPYRLVPEFARHHQPQESRQRGRIVGGEVVVPNSFPFHTAILLVLRSGRVTLCGGTLLSPVRTLTAAHCVATIVGTTVIVGGHNIDELEETQQRVDVPPSHFRIHPDYNEFFHNDIAILLHPTSLTLNTYVQPTRLPTLQKREDFIGETATIIGHGMTGDGTMPTPILRKSSNVIVPNAECENAFGTAFVPPTVICMSTVGKRGICSSDSGGSLLVHRDGLDKRPIQIGVSSYGGGCESELPNGFTRVTDFLEWIDDTQT
| Type | Start | End | Length |
| CDS |
3841 |
4252 |
412 |
| CDS |
4469 |
4923 |
455 |
| intron |
4253 |
4468 |
216 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659051 |
serine collagenase 1 precursor, putative [Aedes aegypti] gb|EAT40044.1| serine collagenase 1 precursor, putative [Aedes aegypti] |
1e-37 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00089.21 |
Trypsin |
7.2e-39 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes