MidgeBase gene description page [Pn.09956]
Outline
| Gene ID | Pn.09956 |
| Type | Protein coding gene |
| Scaffold | PnScaf10458 |
| Start | 44125 |
| End | 48106 |
| Direction | + |
Sequence
Transcript: 1842 (bp)
ATGACTTCACAACGCTTCTGTCTACGATGGAACAACCACCAATCTAATCTATTATCTGTCTTTGATCAACTCCTACACGCTGAAACATTCACAGATGTGACACTCGCAATCGACGGACAGTATCTCAAGGCTCACAAGATGGTGTTATCAGCGTGCAGTCCATACTTCCAACAGCTATTCGTAAATCATCCCGAGAAGCATCCGATCGTGATATTGCGTGACGTGCCGTACGCCGACATGAAGAGTCTCCTAGATTTTATGTACCGTGGCGAGGTGTCGGTCGACCAGGAACGACTGTCCGCCTTTCTGCGCGTCGCCGAGAGTCTGAGGATAAAGGGCCTCACGGAGGTCAACGACGAGAAGCCGCCGAGTCGAGAACAAAGTGACACGCCTCTCTCCTCCACGCAGCAGACGCGCATGCAGAACAATTTCACACCGCAGCGAAAAGTTCTACAGCAGCAGCAGATTCCGCAGCAGCAACAGTCGCAGCAACAGCCGCAGACGCAAACGCAGCAAGCGCAACAGGCGGGCAGTCCGTCGATGCCGAAAAGGAAAAGGGGCCGTCCGAGGAAGCTGAGTGGAAGCGACGACGTGGACGACTACGACGACGACTATCGAGAGAATTTGCTGCAGGGCTCACCGGAATTGATGGAGGTGAAGATGAACACGGACAACTACTCAAATTCAGGCAATGACACAAACTCCGAGGAAAACGACAGTCGACGACGAACGGACGACACAGATGAGGACTCACGATCACAGCAAAAGAGACAGCAAACCGACACGACCGACGGAGCGAACACGAAGAAGGACGATTCGAGCCAAAATGTCGATGCCGATTCGGACGATGACGAAACGATGATGATCGAGCCGCAACTGTTGCTCGACGAGTTCGACGAGCCGATGGAGTTCAAGTACAATCCCGACAATGATTCCAACTCGAATACACCGCAGCGCTCGACGCCGGGACCGCAAAACGGCAGCCAGGAGTCGAACGGCACGAGCAACAACAACAACAGCTTGACGCAACAGCAGGCACTCATGCCGCAGTTGCTTCAGAAAAAACAGCAGCAGCAGCAGCTTCTCTTGCAGCAGCAAATGCCAAAACTCACGCCGATTGCGGCGGGCAATCAGGCAGCCGCGGCGGCGGCATTCATCATCGGCAAGAATCTACCAAAGCAAAACAAACGTGCAAAGCTCCTGAAGCAGCAGAACGGCGAGATGAAGCCGATCTCGGTGCAGACGGGCTCGGGACAGTCGATGCAGCTGTCGAACGTCCTCAGCGGCATCAACAATAACGAGTTCATTGATCTTTTCTCAAACAACCTCCTCCTCAATTCCGCAATCAGTCAGTCGAATCTTAATCTTAAAATTAAGGCGATCAAGCAGATGATGCCGGGTCCGACTGTGTCGACACCGCAGCAACAGTCGCAACAACAGTCGCAGACGTCGCCGCTGTCGACGCCGGGCAGCGGCAGCGATTCGGGCTTGAAGGTCGAGCCGGTGATTCAGGACAATCGCAGCAATAAGTATGCAATCGACGACTCCGAGGGTTCCGTTCGTGATTTTTGTACCAAAGAAGCTGATCATGTCTATCGCTGCAAAGTGTGTTCGCGCGTCTACACTCACATATCCAACTTTTGTCGTCACTATGTGACATCACACAAGCGCAACGTGAAGGTCTATCCGTGTCCCTTCTGCTTCAAGGAGTTCACGCGAAAAGACAACATGACCGCGCACGTAAAGATCATTCACAAGTTGGAGCACCAGCAGCAGCAAGAGCAGGGAGGTGACGCGTCTCCATCGCAACTAGCGACGCCCACGCTGGCCACAACCAGTCAA
Protein: 614 (aa)
MTSQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAIDGQYLKAHKMVLSACSPYFQQLFVNHPEKHPIVILRDVPYADMKSLLDFMYRGEVSVDQERLSAFLRVAESLRIKGLTEVNDEKPPSREQSDTPLSSTQQTRMQNNFTPQRKVLQQQQIPQQQQSQQQPQTQTQQAQQAGSPSMPKRKRGRPRKLSGSDDVDDYDDDYRENLLQGSPELMEVKMNTDNYSNSGNDTNSEENDSRRRTDDTDEDSRSQQKRQQTDTTDGANTKKDDSSQNVDADSDDDETMMIEPQLLLDEFDEPMEFKYNPDNDSNSNTPQRSTPGPQNGSQESNGTSNNNNSLTQQQALMPQLLQKKQQQQQLLLQQQMPKLTPIAAGNQAAAAAAFIIGKNLPKQNKRAKLLKQQNGEMKPISVQTGSGQSMQLSNVLSGINNNEFIDLFSNNLLLNSAISQSNLNLKIKAIKQMMPGPTVSTPQQQSQQQSQTSPLSTPGSGSDSGLKVEPVIQDNRSNKYAIDDSEGSVRDFCTKEADHVYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKLEHQQQQEQGGDASPSQLATPTLATTSQ
| Type | Start | End | Length |
| CDS |
44125 |
44262 |
138 |
| CDS |
45075 |
45569 |
495 |
| CDS |
45674 |
45787 |
114 |
| CDS |
45858 |
45939 |
82 |
| CDS |
47091 |
48103 |
1013 |
| intron |
44263 |
45074 |
812 |
| intron |
45570 |
45673 |
104 |
| intron |
45788 |
45857 |
70 |
| intron |
45940 |
47090 |
1151 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_733446 |
tramtrack, isoform D [Drosophila melanogaster] ref|NP_733447.1| tramtrack, isoform F [Drosophila melanogaster] ref|NP_524911.3| tramtrack, isoform C [Drosophila melanogaster] ref|NP_001189330.1| tramtrack, isoform H [Drosophila melanogaster] sp|P17789.2|TTKB_DROME RecName: Full=Protein tramtrack, beta isoform; AltName: Full=Repressor protein fushi tarazu; AltName: Full=Tramtrack p69 emb|CAA50634.1| tramtrack p69 [Drosophila melanogaster] gb|AAF57181.1| tramtrack, isoform D [Drosophila melanogaster] gb|AAM52681.1| LD28689p [Drosophila melanogaster] gb|AAN14283.1| tramtrack, isoform F [Drosophila melanogaster] gb|AAN71478.1| RE69322p [Drosophila melanogaster] gb|AAF57182.3| tramtrack, isoform C [Drosophila melanogaster] gb|ACL88836.1| ttk-PC [synthetic construct] gb|ADV37420.1| tramtrack, isoform H [Drosophila melanogaster] |
1e-140 |
| InterPro |
IPR015880 |
Zinc finger, C2H2-like |
|
| InterPro |
IPR013069 |
BTB/POZ |
|
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR007087 |
Zinc finger, C2H2 |
|
| InterPro |
IPR000210 |
BTB/POZ-like |
|
| InterPro |
IPR013087 |
Zinc finger C2H2-type/integrase DNA-binding domain |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF13894.1 |
C2H2-type zinc finger |
0.0002 |
| Pfam |
PF13912.1 |
C2H2-type zinc finger |
0.017 |
| Pfam |
PF00096.21 |
Zinc finger, C2H2 type |
3.9e-06 |
| Pfam |
PF02178.14 |
AT hook motif |
0.42 |
| Pfam |
PF00651.26 |
BTB/POZ domain |
3.6e-25 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP003537 |
| N. vitripennis |
NV13850-PA |
| T. castaneum |
TC013842 |
| C. quinquefasciatus |
CPIJ009647 |
| A. aegypti |
AAEL003932 |
| P. vanderplanki |
Pv.09531 |
| D. melanogaster |
FBgn0003870 |
| C. quinquefasciatus |
CPIJ009648 |
| A. mellifera |
GB10751-PA |
| B. mori |
BGIBMGA007530-TA |
| H. melpomene |
HMEL015189-PA |
| S. invicta |
SI2.2.0_11549 |
| P. humanus |
PHUM489940-PA |
| D. plexippus |
DPOGS204256PA |