MidgeBase gene description page [Pn.09889]
Outline
| Gene ID | Pn.09889 |
| Type | Protein coding gene |
| Scaffold | PnScaf10345 |
| Start | 12133 |
| End | 13794 |
| Direction | - |
Sequence
Transcript: 1317 (bp)
ATGAAGCTAGTTTTGCTGCTCGCACTAACCGCGTCCTTCTTCGCCACATCACGCGCCTTCCAGGCCGAGTGCACCTTCGGCTACCGCCAAATCTCCATCGCCAATGTCTACTCGTGCTCGGTCGACCTCAACAACCTCGCTGGCCAGGAGATCAACTCGCTGACGGGCACGCACGCATCCGGCAGAACGGATGAGCACGTCGTCGGTCTGGTCGTCGCCGGGACGACCACGATCGTGCCGAGCATGTTCTGCGCGCGCTTCACGAACCTCAGATGGGTTCAGCTCGGCGGCGTCGGCCTCACGACCCTCACCGACACCTCCTTCCGCGGCTGCACCGAGCTCATCTTCCTCCGCCTGGCGGCCAACCGAATTTCCGCGGTGAGCGCCGACACTTTCGCGACCAACGCGCTGCTCGACGAGCTCGATCTCGGCAACAACCAGCTGGCAACGCTGCCCGAGGGAATTTTCGCCAACCAGCTGCGTCTGTATCGGCTACATCTCAACAACAATCCGCTCACCTCGCTGCCCGGCAGCATCTTCGACAACACGGGTATTCTGGACTATGTCGACCTCTCGCACGGACTGCTCGGTGCCATCCACGCCAACTGGTTCGCGTCCGCGTCGCGCATCCGCATGCTCGCTTTGAGCAACAACCGGATCGCCATTCTCGGCGCCAACTCGTTCTCGGGACTGGCGGCGCTCGACTTTCTTGACCTGCGGAACAACAGCATGCTGGTGGTGAGCAACGACGCGTTCCGCGGCCTCGACTCGCTGCGCATCCTCGACCTCAGCGGCAACAACATCGCGACCATCAACGAGCGCGCCTTCAGCGGCCTCTCCCGACTCGAGTCGCTGAACCTCGGCGAGAATCTCGTCGCGCGAGTGCAGAGCGGCGCCTTCCGGGAGCTGCCGAGTCTGAGGCTTCTGCAGCTCTTCAGGAACGGCGCCTTCGACCTGCAAGTCGGCGCCTTCGAGGGCCTCGAGCGCCTCGAGAATCTCCACCTCGAGGGCAACGCTTTGAGCGCTCTGCAGGCGGGCGTTTTTGCGCCGCTCACCGCCCTGCGCTACGTCGGCCTCGACCGAAACGCGCTGCGAGTCGTGCGCCGCAATTGGTTCGGCAGCGACCTCTCCACGCTGCAGGCACTCGGCTTGGAGGTGAACGGCGTGAATGCACTCGAGAGGAGTCTGCTCGTCGACGCCTCGAACATCGAAAGCGTGTACTTTCTGGAAAATGCCTGCGCCAACGGTCGCTTCAGCTCGTTCCCCAATCGCGACCAGTTTTTGGCACAATTCGAAATTTGCTTCAGCAATTTTGTG
Protein: 439 (aa)
MKLVLLLALTASFFATSRAFQAECTFGYRQISIANVYSCSVDLNNLAGQEINSLTGTHASGRTDEHVVGLVVAGTTTIVPSMFCARFTNLRWVQLGGVGLTTLTDTSFRGCTELIFLRLAANRISAVSADTFATNALLDELDLGNNQLATLPEGIFANQLRLYRLHLNNNPLTSLPGSIFDNTGILDYVDLSHGLLGAIHANWFASASRIRMLALSNNRIAILGANSFSGLAALDFLDLRNNSMLVVSNDAFRGLDSLRILDLSGNNIATINERAFSGLSRLESLNLGENLVARVQSGAFRELPSLRLLQLFRNGAFDLQVGAFEGLERLENLHLEGNALSALQAGVFAPLTALRYVGLDRNALRVVRRNWFGSDLSTLQALGLEVNGVNALERSLLVDASNIESVYFLENACANGRFSSFPNRDQFLAQFEICFSNFV
| Type | Start | End | Length |
| CDS |
12136 |
12844 |
709 |
| CDS |
13187 |
13794 |
608 |
| intron |
12845 |
13186 |
342 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFW42421 |
predicted protein [Capsaspora owczarzaki ATCC 30864] |
4e-36 |
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
8.9e-54 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
7.5e-24 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
2.8e-05 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
1.4e-14 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
3.2e-21 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
0.017 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes