MidgeBase gene description page [Pn.09887]
Outline
| Gene ID | Pn.09887 |
| Type | Protein coding gene |
| Scaffold | PnScaf10345 |
| Start | 2813 |
| End | 5296 |
| Direction | + |
Sequence
Transcript: 1602 (bp)
ATGAAGCTCAACTTCGCCTCCATCTTGACGATTTTCGTCGCCACAAGCCTCGCCGCCGCGCAAACGGTGTCGATCCAGTGCGAGTACACGCCCATGACCATCAACAACGAGCAGGAGTACGGCTGCTACCTCACCATCCACAACCCCGACGGCTTCGACAACTTCCTGCACATCTCGGGCGAGCACACGTTCGGCTTCTCCAACGCCGACGTCACGGTGCTGCTGCGCGAAGCGGGATCGACGTCGCTGGTGCCGCGCATCATCTGCAGCCAGTTCCCGAACCTCAAGTGGATCGCCCTCTCCACACTCGGCATCAGCGAGGTCACGGCGACCTCTTTTGGCGGCTGCCCGCGTGCTCTTTCCATCAATCTTGCCGAAAATCGGCTGCAGTCCTTGGCCGCCAACTCCTTTGCCGGAAATGCTCAGCTCACGAGCCTCAATCTGCAGAACAACCAGCTCGAGACGCTTCCGGTCGGGGTTTTCGCCAACAGCAGTCGCCTCGAGATTCTCTATCTCAACGGCAACAGCTTGCGCTCTCTTCCCTCGGGCGTGTTCGGTGGTCTCAGCAGCCTGCGTCTCCTCAACCTCCAGGTCAATCGCCTCGCCTCACTGGACGGTACCACCACCTTCGGGACGCTGCCGGTCCTCGAACGGCTCTACCTTTACAGCAACGAGTTGACGGAGCTGACAGCGGCATCTTTCGGCGTCTTCGAGAACCTCCAGTATCTCGACGTGAGCGACAACCCGATCACGGTCATCCGGAGCGGCGCCTTCCACACGATGCGGAATCTCGAGTATCTCTACATCAACGCGTGCCACGTCAGTCGCCTCGAGAGCGACTCCTTCGAGGGCCTCGAGCGGCTGCTTTACCTCTACCTGGTCGAGAATCTCATTGACGAGCTGCCGGCTGGCGTCTTCCGGCACTTCGGCAACATCTTCACGCTTGGCTTGCTCGAGAACTCGCTGAAGACAATCAGGCGCGAGCACTTTGGCAACCTAACGCTTCTCTCGGTGCTCGACCTCGACAACAACAACGTCAATGCGATCGAGAGGAGCGTCATTGAGGACGCGACCGCCCTCGACACTTTGAGGATCGTCAACAACCTCTGCGTGAGCGGGTACATGAGCAACTTCCGCGAGACTCGCGAGGAAAATTTGGAGCGACTGGCGCGGTGCTTCAGGAACTTTGAGTGGACTGTCGAAACCACGACCGAGAGCAACGCCACGTTCCAGTTCTACCCAGCCCTCGAGCCGGGTCTGCAGGTCCGCGTGCAGTCTAACAGCACAATCCAAATAGCACTCGCGGCAACCAACACGACAGCTGCACCCTTCATCGAGATTTCGATCGGAGCGGCCAACAACACGCGCTCAGTAATTCGCGTCAACCAGCAGACAGACGTGGCTGTCGTTCCCTCGCCGGGCATCATCCAGAGTGGCGAATGGAGCGGCTTCCGAGTCACGTGGGCGAACAACGTGGTGCTGGTGTTCAGAGAGGGCGACCCTTGGCCTTTCTTGGTGCACACCATGGCAGAGCCATTTACGGTGAACTTTTACGGACTGAGAACGCCCGAGTCGAGAGGAGCTTGGAGCATTCAGCCGGTG
Protein: 534 (aa)
MKLNFASILTIFVATSLAAAQTVSIQCEYTPMTINNEQEYGCYLTIHNPDGFDNFLHISGEHTFGFSNADVTVLLREAGSTSLVPRIICSQFPNLKWIALSTLGISEVTATSFGGCPRALSINLAENRLQSLAANSFAGNAQLTSLNLQNNQLETLPVGVFANSSRLEILYLNGNSLRSLPSGVFGGLSSLRLLNLQVNRLASLDGTTTFGTLPVLERLYLYSNELTELTAASFGVFENLQYLDVSDNPITVIRSGAFHTMRNLEYLYINACHVSRLESDSFEGLERLLYLYLVENLIDELPAGVFRHFGNIFTLGLLENSLKTIRREHFGNLTLLSVLDLDNNNVNAIERSVIEDATALDTLRIVNNLCVSGYMSNFRETREENLERLARCFRNFEWTVETTTESNATFQFYPALEPGLQVRVQSNSTIQIALAATNTTAAPFIEISIGAANNTRSVIRVNQQTDVAVVPSPGIIQSGEWSGFRVTWANNVVLVFREGDPWPFLVHTMAEPFTVNFYGLRTPESRGAWSIQPV
| Type | Start | End | Length |
| CDS |
2813 |
3403 |
591 |
| CDS |
3909 |
4518 |
610 |
| CDS |
4830 |
5196 |
367 |
| CDS |
5260 |
5293 |
34 |
| intron |
3404 |
3908 |
505 |
| intron |
4519 |
4829 |
311 |
| intron |
5197 |
5259 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFW41510 |
predicted protein [Capsaspora owczarzaki ATCC 30864] |
1e-29 |
| InterPro |
IPR022041 |
Farnesoic acid O-methyl transferase |
|
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
2.7e-49 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
2.7e-28 |
| Pfam |
PF12248.3 |
Farnesoic acid 0-methyl transferase |
4.5e-16 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
0.00022 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
4.6e-17 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
1.6e-24 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
0.00014 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06951 |