MidgeBase gene description page [Pn.09886]
Outline
| Gene ID | Pn.09886 |
| Type | Protein coding gene |
| Scaffold | PnScaf10345 |
| Start | 4 |
| End | 2131 |
| Direction | - |
Sequence
Transcript: 1566 (bp)
ATGAAGTCGCAACTTTTCACCGCACTTTTCGCTCTTCTGCTCTTCAATGCCGCGAAGGCGCAGGAGCTCAACTGCCTGTACGTGCACGGCACAATCGACGGCGTGCCCAGCTACTTTTGCTACCTCATCGCCAACAACCAGCTCGGCCTCGACAACATCACGCGAGTCGGCGGCGAGCACGTGGCCAACTTCACCGACACCGACATGGTCGGCGTTTTCAGCCTCGACGGCGCCACCGCCAACCTCCCCACCGTCATTTGCCGGCAATTCCCGAACCTCGTCTTCCTCGACCTCACCAGCCTGCAAATCAGCACCGTCGCGGCCAACGCCATCGGTGGCTGCACGCAGCTCGAGTTCCTGCGCTTCTACAACAACAGCGTGCCCGCGCTGGCGGCGAACTTCTTCGCCAACAACTCGCGTCTCACCTACATCGACCTCGACCGCAATCAGCTGACCACGCTGCCCGAAAATGTCTTCGCCGGACTCGTGAACGTCGACATGCTGGAGCTTCGCAACAACCCCTTCCAGCTCATCCCGGACAACCTCTTCCGGCCGCTCGTGAACCTCGAGATCCTCTACCTGCAGAACACGCGTCTCACGCAGCTCAACACCGCCTGGCTGGCCGGGCTCAGCCGCCTCGTGGTCCTCACCGTCTACAACAACAACATCACGCAGATCGCGGCCAACACGTTCGCGTCGGTGCCGAACTTGAGGGAGCTGGAAATCAGCCGCAACCCGCTGGGACCGACCGGAATCCACGTCAACGCCTTCCAGCCGCTCACGAACCCCGTCTCGCTCTACATCGCCCAGATCGACTGGCGCGCCGTCAACACGCAGCTGCTGCTGCCGCTGCGCAACCTGCGGATCCTCTTCGCCTACTGGAACGGCATCGAGACGGTCCCGGCCGGCACCTTCGCCAACCTCACGGGCCTCTGGGCGCTCGACTTGGGCGTGAACCTGCTGGACGAGACGACCATCGCGCCCGACGCTTTCGACCCGTTGCGCGAGCTCGTCGCGCTCTACCTCGACGACAACTACATCGAGGCGCTCGAGCCGCGCTGGTTCGCGAACCTCCACGACGTCACCAGCCTCTTCCTCGACTTCAACTTCATCCCGGCCCTGCCCGCAGGCATTTTTGCGCCGTTCCGGGCGCTGCAGCAAATCCACCTCTGGTACAACGACATCAAGACCGTCGACCGGAACGCCTTCGGTGACTTGAGCGCGCTGACCATAGTCGACCTGGACCAGAACGTCGTCAACAGCGTGGAGGAGAGCTTCTTCAGGGACAGTCTGCGCCTCAATGTCGTCTACTTCTGGCAGAATCTGTGCGCGAGTGTGACCATCTATGGGTTTGTGGCCAACCGCGACGACAACATTGAGCGCTTCCGCCGGTGCCTCGACAACCACGGCTTCGTCATTGCTCAGAAAACGCAGAAACCGACGGCGTCGAAGACTTCCAGTTCTTCCCAGGCCGCCACCCGGGCATTCAACTACGCGTGCAAACAACAGAGCAGGTCGAAATCGCGCTCACGCCCTTCGACTTCGCGTGGACGCCGATGCTGGAGG
Protein: 522 (aa)
MKSQLFTALFALLLFNAAKAQELNCLYVHGTIDGVPSYFCYLIANNQLGLDNITRVGGEHVANFTDTDMVGVFSLDGATANLPTVICRQFPNLVFLDLTSLQISTVAANAIGGCTQLEFLRFYNNSVPALAANFFANNSRLTYIDLDRNQLTTLPENVFAGLVNVDMLELRNNPFQLIPDNLFRPLVNLEILYLQNTRLTQLNTAWLAGLSRLVVLTVYNNNITQIAANTFASVPNLRELEISRNPLGPTGIHVNAFQPLTNPVSLYIAQIDWRAVNTQLLLPLRNLRILFAYWNGIETVPAGTFANLTGLWALDLGVNLLDETTIAPDAFDPLRELVALYLDDNYIEALEPRWFANLHDVTSLFLDFNFIPALPAGIFAPFRALQQIHLWYNDIKTVDRNAFGDLSALTIVDLDQNVVNSVEESFFRDSLRLNVVYFWQNLCASVTIYGFVANRDDNIERFRRCLDNHGFVIAQKTQKPTASKTSSSSQAATRAFNYACKQQSRSKSRSRPSTSRGRRCWR
| Type | Start | End | Length |
| CDS |
7 |
144 |
138 |
| CDS |
204 |
211 |
8 |
| CDS |
278 |
1159 |
882 |
| CDS |
1594 |
2131 |
538 |
| intron |
145 |
203 |
59 |
| intron |
212 |
277 |
66 |
| intron |
1160 |
1593 |
434 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFW43107 |
tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864] |
1e-37 |
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
1.7e-50 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
1e-33 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
1.3e-07 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
3.7e-19 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
1.9e-18 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
1.5e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06952 |