MidgeBase gene description page [Pn.09876]
Outline
| Gene ID | Pn.09876 |
| Type | Protein coding gene |
| Scaffold | PnScaf10316 |
| Start | 5787 |
| End | 7716 |
| Direction | - |
Sequence
Transcript: 1320 (bp)
ATGAATGAGTTAAGGACGTTAGCTCTAGTTTTGCTCATCCAGTTCACCTTTGTTGTGGCCGACGAGGTGAAGCTGTCGATTGGAAAAGAAGAAGGCGACGAAAACTCGACCTTTGTGGCGACGGACGAGTGGCAAGAAATCAAACCGGGCCAGAGAGTGCCGCAGGGCCTGCACTACAGGATCAACGTCTCGACGGGCAAGAAGGAGGCGAAGCTCCTCGACCCGAGCGAGGACCGGCAGCCGCCGGCGACTCAGCTGTCGGCGACCGAGAACCAGAGCGAGGAGAGCGAAGTCGCCGGCGCCAAAAAGCGACTCGAGGAGGCGCTCAAGAACATCCCGGGCGAGGGCTTCGGCGCGGAGGACGCGGAGGCGCGCTGGCGGGAGGTGAAGCGGAAATTCCGCAGCTACGACGAGATCAAGCGCGAGCTCAAGGACATCGACCTGCAGCCGCAGACCGAGGCCGAGGTGCTCGCACAGCTGATGGACGAGTTCGCGAACCGCACCGAGGGCCGGCTGGAGGTGCTCAGAGACCTCGAGCACCTGCTGCACTCCATCGACAATGCGCTGCTCTTCGTCGAGCGCCGCGGCCTCGAGACAATCGTCGTGCCGCACCTCGCCAATCAGACGGCCGCCGAGTGGCGCGTCGTGCTGCTCAGGATCGTCGGCGCCATCAGTCAGAACAACATCCAGGCGAAAAAGTACATCTGCGAGAGGACGAATCTCGTCAACGACCTCACGGCCATTGCCGGCAGGTGCGAGCAGCTCGAGGAGTTGTCGGCGGCGCTCTTCAGCATCGGCAGCCTCGCGCGCTCCAACGCGCTCCTTAGCGAAGCTCAGCTGAGACGGCTGCTGACAGTTCTAGCCGAAATCCTGGCCAAGGACGCCGTCGGCATCGCGCCGAAAGTGAAGACTCTGCTGCTGGTCGACGACCTCGTCAGCGACTCGCATGCCGACCTCGCGGCCTTCGTCGAGAGCTCGAAGCTGTGCCAGCAGCTCGCGGCCTTCCTCGAGGCCAGCAAAAGTCTCCTCATTGCCGACGCGGACGCGGCCGAAAAGACGGCGGCTGCGTTTCTGAGTCTCTCGGCGCGGTGCGGCGCACGCTGGTCGGAGCTGCCGATTTTGCGGCACACGCTGCTGGTCATTGCGAGCAGCTACAAAATGCGCCTCAGCGAGGAGGCCGGCGACGGGGAAGAGGCCGAGGAGAGCCGGACATTCATGCATGGACTGATTGTGGAACACCTCGAGAACCTCAACCAGGTGCTGTATGGCGAGCTGAAAATCAGCGCCGACGATCTGAGCGACCGCTACCGGGACGAGCTG
Protein: 440 (aa)
MNELRTLALVLLIQFTFVVADEVKLSIGKEEGDENSTFVATDEWQEIKPGQRVPQGLHYRINVSTGKKEAKLLDPSEDRQPPATQLSATENQSEESEVAGAKKRLEEALKNIPGEGFGAEDAEARWREVKRKFRSYDEIKRELKDIDLQPQTEAEVLAQLMDEFANRTEGRLEVLRDLEHLLHSIDNALLFVERRGLETIVVPHLANQTAAEWRVVLLRIVGAISQNNIQAKKYICERTNLVNDLTAIAGRCEQLEELSAALFSIGSLARSNALLSEAQLRRLLTVLAEILAKDAVGIAPKVKTLLLVDDLVSDSHADLAAFVESSKLCQQLAAFLEASKSLLIADADAAEKTAAAFLSLSARCGARWSELPILRHTLLVIASSYKMRLSEEAGDGEEAEESRTFMHGLIVEHLENLNQVLYGELKISADDLSDRYRDEL
| Type | Start | End | Length |
| CDS |
5790 |
6419 |
630 |
| CDS |
6478 |
7019 |
542 |
| CDS |
7569 |
7716 |
148 |
| intron |
6420 |
6477 |
58 |
| intron |
7020 |
7568 |
549 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001660873 |
sil1 [Aedes aegypti] gb|EAT37538.1| sil1 [Aedes aegypti] |
2e-51 |
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV11515-PA |
| H. sapiens |
ENSP00000426858 |
| P. humanus |
PHUM446250-PA |
| A. aegypti |
AAEL014818 |
| T. castaneum |
TC012300 |
| H. sapiens |
ENSP00000378294 |
| C. quinquefasciatus |
CPIJ012670 |
| P. vanderplanki |
Pv.10506 |
| M. musculus |
ENSMUSG00000024357 |
| H. sapiens |
ENSP00000265195 |
| S. invicta |
SI2.2.0_14151 |
| A. aegypti |
AAEL010476 |
| D. melanogaster |
FBgn0039296 |
| A. mellifera |
GB18167-PA |
| A. gambiae |
AGAP003488 |