MidgeBase gene description page [Pn.09854]
Outline
| Gene ID | Pn.09854 |
| Type | Protein coding gene |
| Scaffold | PnScaf10270 |
| Start | 472 |
| End | 2251 |
| Direction | - |
Sequence
Transcript: 1245 (bp)
ATGTCGCTGCCTCTGAGACTCGCAAAGACAGCCGTCGCCAACGCTCGCAACTGCTCATCGGCCGCCCGCAAATTCAACGACGTCGTGATCGTCTCGGCCGTGAGAACTCCGATCGGCTCCTTCCAGTCGTCGCTGTCGGCGCTTTCGGCGAGCCAGTTGGGAGGCGTCGCCGTCCAGGCGGCCATCAAGAAGGCCGGCATCGCCAACGAGACCGTCGACGAAGTCGTCTTGGGCAACGTCGTGAGCGCTGGAATGGGTCAAGCGCCAGCGCGTCAGGCGGCCATTTTCGCGGGCCTGCCCACCTCGGTTTGCTGCACGACCGTCAACAAGGTGTGCAGCAGCGGCCTGAAGACGGTCTCGCTCGCGGCTCAGACCCTCATGCTCGGCCAGGGCCAGGAGGTGATTGTGGCCGGCGGCATGGAGAGCATGTCGAACGTGCCGTACTATCTCCGGCGCGCGGCCCTCCCGTACGGCGGCGTCAACCTCATCGACGGCATCGTGCACGACGGCCTCTGGGACCCGTACAACAAGTTCCACATGGGCAACTGCGCCGAGAACACCGCCAAGAAGCTGGGCATCTCGCGCCAGCAGCAGGACGAGTTCGCGGTCGCCAGCTACCGGCGCTCGGCGGACGCGTGGGCGGCGAAGGTCTTCGACGCCGAAATCACGCCCGTCTCGATTCCGCAGAAGCGCGGCAAGGCCGACGTGGTGGTGGCCGAGGACGAGGAGTTCAAGCGCGTCAACTTCGACAAGTTCGGCAGCCTCGGGACGGTCTTCCAGAAGGAGGGAGGAACCGTCACGGCGGGCAACGCGTCCACGCTCAACGACGGCGCCTGTGCGCTGGTCCTGATGACGGCGCAGGCGGCCGAGAAGCACAAGTGCAAGCCGCTCGCGCGCGTCGTCGGGTTTGCTGATGCCGAGACTGATCCCATCGACTTCCCCATTGCACCGGCCAAGGCGGTTCCGAAGCTGCTCAAGCAGACGGGCGTGCGCAAGGAGGACGTGGCTCTGTGGGAGGTCAACGAGGCCTTTTCGCTGGTCGTCCTCGCCAACATGAAGCTCATGGAGCTCGACCACAAGAATGTCAACGTGCATGGCGGCGCCGTGTCGCTCGGACACCCGATCGGCATGAGCGGCGCTCGCATCGTCACGCACCTCGTGCACAACCTGAAGCAGGGAGAATTCGGCTGCGCGAGCATCTGCAACGGCGGCGGCGGCGCCAGCTCGATCATGATCGAGAAATTG
Protein: 415 (aa)
MSLPLRLAKTAVANARNCSSAARKFNDVVIVSAVRTPIGSFQSSLSALSASQLGGVAVQAAIKKAGIANETVDEVVLGNVVSAGMGQAPARQAAIFAGLPTSVCCTTVNKVCSSGLKTVSLAAQTLMLGQGQEVIVAGGMESMSNVPYYLRRAALPYGGVNLIDGIVHDGLWDPYNKFHMGNCAENTAKKLGISRQQQDEFAVASYRRSADAWAAKVFDAEITPVSIPQKRGKADVVVAEDEEFKRVNFDKFGSLGTVFQKEGGTVTAGNASTLNDGACALVLMTAQAAEKHKCKPLARVVGFADAETDPIDFPIAPAKAVPKLLKQTGVRKEDVALWEVNEAFSLVVLANMKLMELDHKNVNVHGGAVSLGHPIGMSGARIVTHLVHNLKQGEFGCASICNGGGGASSIMIEKL
| Type | Start | End | Length |
| CDS |
475 |
785 |
311 |
| CDS |
843 |
1520 |
678 |
| CDS |
1996 |
2251 |
256 |
| intron |
786 |
842 |
57 |
| intron |
1521 |
1995 |
475 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657918 |
acetyl-coa acetyltransferase, mitochondrial (acetoacetyl-coa thiolase) [Aedes aegypti] gb|EAT41757.1| acetyl-coa acetyltransferase, mitochondrial (acetoacetyl-coa thiolase) [Aedes aegypti] |
0.0 |
| InterPro |
IPR016039 |
Thiolase-like |
|
| InterPro |
IPR002155 |
Thiolase |
|
| InterPro |
IPR020615 |
Thiolase, acyl-enzyme intermediate active site |
|
| InterPro |
IPR020616 |
Thiolase, N-terminal |
|
| InterPro |
IPR020617 |
Thiolase, C-terminal |
|
| InterPro |
IPR020613 |
Thiolase, conserved site |
|
| InterPro |
IPR016038 |
Thiolase-like, subgroup |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016747 |
transferase activity, transferring acyl groups other than amino-acyl groups |
|
| Pfam |
PF00109.21 |
Beta-ketoacyl synthase, N-terminal domain |
0.0073 |
| Pfam |
PF00108.18 |
Thiolase, N-terminal domain |
3.8e-95 |
| Pfam |
PF02803.13 |
Thiolase, C-terminal domain |
1.1e-42 |
| Pfam |
PF08545.5 |
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
0.031 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ019232 |
| D. plexippus |
DPOGS205286PA |
| S. invicta |
SI2.2.0_01114 |
| T. castaneum |
TC000365 |
| H. melpomene |
HMEL017484-PA |
| A. aegypti |
AAEL006634 |
| H. sapiens |
ENSP00000265838 |
| B. mori |
BGIBMGA011029-TA |
| N. vitripennis |
NV12039-PA |
| D. melanogaster |
FBgn0029969 |
| A. mellifera |
GB18952-PA |
| P. humanus |
PHUM080110-PA |
| P. vanderplanki |
Pv.12334 |
| A. gambiae |
AGAP011329 |
| M. musculus |
ENSMUSG00000032047 |